Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., nif-specific transcriptional activator NifA from Rhodopseudomonas palustris CGA009

 Score =  228 bits (580), Expect = 6e-64
 Identities = 162/443 (36%), Positives = 245/443 (55%), Gaps = 33/443 (7%)

Query: 112 PLPMDTRQVHSILLLM---GESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRL- 167
           P+ +D+R V ++ +     G SH  + A  +  FL  +     Q   L+ +   ++ RL 
Sbjct: 145 PIRIDSRVVGTLSIDRVRDGRSHFRMDA--DVRFLTMVANLIGQTVKLHRVVARDRERLM 202

Query: 168 ----ELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGET 223
                L++ L++++    +R         ++GES A++KL  ++   A SQ  V+++GE+
Sbjct: 203 AESHRLQKELSELK---PERERKRVKVDGIVGESPAIRKLLAKVSIIAKSQSPVLLRGES 259

Query: 224 GTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQ 283
           GTGKEL+A A+HELS+R + PF+ INCAA+PE +LESELFG+ KGAF+GA + ++G    
Sbjct: 260 GTGKELIAKAIHELSARANGPFIKINCAALPESVLESELFGHEKGAFTGAIASRKGRFEL 319

Query: 284 ANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRK 343
           A+ GTLFLDEIG++  + QAKLLRVL+ + F  +GG Q +  + R+V+AT+ NL + V +
Sbjct: 320 ADKGTLFLDEIGEISASFQAKLLRVLQEQEFERVGGNQTIKVNVRIVAATNRNLEEAVAR 379

Query: 344 KEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQ 403
           KEFR DLYYR+   P+ LP L  R  DI LL+  F++ FN + N R       A+D LK 
Sbjct: 380 KEFRADLYYRINVVPMILPPLRDRPSDIPLLASEFLKNFN-KENGRELAFESHALDLLKA 438

Query: 404 YDFPGNVRELKHLIEFGCAQTADGTQVEASCFA-HRLQTLPCL--------APE----AT 450
             FPGNVREL++ +    A  A G ++  S FA H+ + L  +        APE      
Sbjct: 439 CSFPGNVRELENCVR-RTATLAMGPEIRDSDFACHQDECLSAILWKGHAEPAPERPRPEI 497

Query: 451 PVAVSVETENVDL-EPSVALAGEPNFAVIHDLKQAVSQFEALIISERL----NRFAGDRA 505
           P+ V      V++  P   +A   +FA      +  S    +   ERL     R    +A
Sbjct: 498 PLQVLPRKAPVEIVHPREPVASADDFAPAPVRSEMPSDESNMSERERLINAMERAGWVQA 557

Query: 506 KAAKSLGIPKRTLAYKCLKLEIK 528
           KAA+ LG+  R + Y   K  I+
Sbjct: 558 KAARILGLTPRQIGYALKKHNIE 580