Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  216 bits (550), Expect = 1e-60
 Identities = 144/369 (39%), Positives = 202/369 (54%), Gaps = 28/369 (7%)

Query: 157 NDMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLS 216
           ++++R   +  +L   L+  +R  A    A     +L GESA+M ++++++ S A     
Sbjct: 119 SELKRLSNKIEQLGHKLSQYKRRMAATLHAQYSLASLKGESASMHQIKDRLRSYARMDAP 178

Query: 217 VMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGAD-S 275
           V+V G TGTGKEL A A+H  S+R + P V+INCAAIP+ L ESELFGY +GAFSGA  S
Sbjct: 179 VLVLGATGTGKELAAHALHAESTRAAGPLVSINCAAIPKDLFESELFGYVRGAFSGAHHS 238

Query: 276 DKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHV 335
            K G I  A+GGTLFLDEIGDMPL  QAKLLRVLESRT   +G       DFRL++AT+ 
Sbjct: 239 GKMGQIELADGGTLFLDEIGDMPLQAQAKLLRVLESRTICRVGAVTAEPVDFRLIAATNR 298

Query: 336 NLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNY 395
           N+ D V+   FR+DLYYR+  + I +P L  R EDI  L+ HF+     +  T       
Sbjct: 299 NIKDMVQAGTFREDLYYRINTFIIEIPSLRDRKEDILPLAHHFLARMGHEGVT----FTP 354

Query: 396 RAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVS 455
            A+  L+ +++PGN+R+L + I    A   +G+ ++             L PE  PV  S
Sbjct: 355 AAVSALQSFEWPGNIRQLHNAI-LHAATMREGSAIDVC----------ALPPEIRPVHTS 403

Query: 456 VETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPK 515
                        +A  P      DL   ++  EA +I   L    G+  +AA +LG+ +
Sbjct: 404 ------------PVAPCPLPQDRSDLAGILAHNEAALIENALREQGGNVTRAASALGVSR 451

Query: 516 RTLAYKCLK 524
            TL  K  K
Sbjct: 452 ATLYEKMKK 460