Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  232 bits (591), Expect = 3e-65
 Identities = 147/354 (41%), Positives = 202/354 (57%), Gaps = 25/354 (7%)

Query: 175 DIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAV 234
           D++R++A R          IGES  M K+ E+I + A S + V+V G +G+GKELVA A+
Sbjct: 123 DLKRENA-RLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGAL 181

Query: 235 HELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEI 294
           H LS R+  PF+ INCAA+PEHLLESELFG+ KGAF+GA   ++G    A+GGTLF DE 
Sbjct: 182 HRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEA 241

Query: 295 GDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRL 354
           G+MPL +QAKLLRVLE +   P+GG      D R V AT  +L + +    FR+DLYYR+
Sbjct: 242 GEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRI 301

Query: 355 FQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELK 414
              P+TLP L  R  D+ LL+E F+R F  QH+ ++   + +A + L  YD+PGNVREL+
Sbjct: 302 NVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVT-FSEQARNALLAYDYPGNVRELR 360

Query: 415 HLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPN 474
           + IE      A+  ++       R++     + E  P     ET  V L   VA      
Sbjct: 361 NAIERAVILCAE-DKIHVGHLPKRIRDATQASQEQQP----EETRFVQLADGVA------ 409

Query: 475 FAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIK 528
                       QFE   I E L +  G R +AA+ LGI ++ L  K  +L+IK
Sbjct: 410 ------------QFEKKRILEALQKTGGRRIRAAELLGITRKQLWLKLKELDIK 451