Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  226 bits (577), Expect = 1e-63
 Identities = 132/333 (39%), Positives = 190/333 (57%), Gaps = 11/333 (3%)

Query: 193 LIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAA 252
           L+G+S  ++KLR Q    A SQ  V + GE+G+GKELVA  +H    R+  PF+A+NC A
Sbjct: 138 LLGKSPEIRKLRNQTRKLARSQAPVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGA 197

Query: 253 IPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESR 312
           IP  L+ESE FG+ KG+F+GA  +K GL   ANGGTLFLDE+ D+PL +Q KLLR ++ +
Sbjct: 198 IPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVADLPLAMQVKLLRAIQEK 257

Query: 313 TFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIE 372
             RP+G  +E+  D R++SATH NL + V++  FRQDL+YR+    +++P L  R +DI 
Sbjct: 258 AVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELSVPPLRERPDDIS 317

Query: 373 LLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEA 432
           LLS H +     ++      L   A+D L+ YDFPGNVREL++++E       D  Q++A
Sbjct: 318 LLSNHILERIAKEYECDPASLTPAAVDRLRSYDFPGNVRELENVLE-RAFTLCDADQIDA 376

Query: 433 SCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALI 492
                 L     +   A+   +  E +  D E      GE       DL+  + + E   
Sbjct: 377 D----DLHLGNGVQHAASASQIIAEGQVGDGEGIAVPDGE------IDLEGYLEKIERQA 426

Query: 493 ISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKL 525
           I + L     ++  AAK LGI  R L Y+  KL
Sbjct: 427 IEKALEATRWNKTAAAKRLGISFRALRYRLKKL 459