Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., sigma-54 dependent response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  210 bits (535), Expect = 8e-59
 Identities = 131/367 (35%), Positives = 212/367 (57%), Gaps = 41/367 (11%)

Query: 155 LLNDMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQ 214
           +++ ++R  +RRL  +++L        +R ++   S T+IG S AM+ +++ I   A + 
Sbjct: 122 MMSAVDRCIERRLLRRENLM------LRREVSIGYSSTIIGSSDAMKSVKQVIERVAPTN 175

Query: 215 LSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGAD 274
             V++QGE+GTGKELVA  +H LS R+  PFV +NC +I   LLESELFG+  GAF+GA 
Sbjct: 176 AVVLIQGESGTGKELVARQLHLLSGRQG-PFVPVNCGSIAPELLESELFGHTAGAFTGAK 234

Query: 275 SDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATH 334
            +++GL + A+GGT+FLDEIG+MPL +Q  LLRVLE +  RP+G ++E++ D R+++AT+
Sbjct: 235 GNREGLFSFASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATN 294

Query: 335 VNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLN 394
             L+D+V    FR+DLYYRL    I +P L  R ED+  L+ HF R    +   R    +
Sbjct: 295 RTLVDEVEAGNFRRDLYYRLNVLDILIPPLRDRPEDVVELTHHFTRQLAAELGVREVVWS 354

Query: 395 YRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAV 454
           +  +  L+Q+++PGN+REL+++IE                     + +    P A     
Sbjct: 355 HEDMVKLQQHEWPGNIRELRNMIE---------------------RCILLGKPPAEYWKQ 393

Query: 455 SVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIP 514
            V+TE      S+A  G P       L   + + E   ++  ++  +G+++ AA+ LG+ 
Sbjct: 394 QVKTE------SLASQGYP-------LDWPLKEVEKHHVTSVVDLHSGNKSAAARDLGVS 440

Query: 515 KRTLAYK 521
           ++TL  K
Sbjct: 441 RKTLDRK 447