Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  221 bits (562), Expect = 6e-62
 Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 21/361 (5%)

Query: 164 QRRLELKQSLTDIERDSAQRSLANALSR-------TLIGESAAMQKLREQIVSAANSQLS 216
           Q+ L++++ +  + R  A R+  N+ +         ++G+S A+++  + +  AA S ++
Sbjct: 100 QKPLKVQEVMLSLSRALAYRAGRNSATGRRPLRRDAIVGDSPALREALDLVEEAAASTVN 159

Query: 217 VMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSD 276
           V++ GETGTGKEL A AVH  S+R  +P V ++CA++ E+L+ES+LFG+ +GAF+GA+ +
Sbjct: 160 VLITGETGTGKELFARAVHANSARCESPLVTLDCASLTENLVESQLFGHVRGAFTGAERN 219

Query: 277 KQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVN 336
            +GL+ QA+GGTLFLDE GD+PL +Q   LR LE R FRP+G   E+SSDFRLV+AT+ N
Sbjct: 220 SEGLLRQAHGGTLFLDEAGDLPLAMQGSFLRALELRRFRPVGSAHEVSSDFRLVAATNKN 279

Query: 337 LLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYR 396
           L +  R   FR DL YRL    ITLP L  R  DI  L EH +  +  QH   ++ +   
Sbjct: 280 LHEMTRLDLFRSDLLYRLRGLTITLPPLRDRTADILPLCEHVIEGYCAQHGAPMKQMAGD 339

Query: 397 AIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRL--QTLPCLAPEATPVAV 454
            ++ +++Y +PGN+REL+H +E  C    D    +++ +A +L  +    +A    P A 
Sbjct: 340 FMETVERYAWPGNIRELRHAVERACTAAHD----DSTLYARQLPVEVRVTVARATIPCAS 395

Query: 455 SVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIP 514
            V+            A E +      L+   +  E   ++  L+R   D   AA   GI 
Sbjct: 396 EVD--------HCMPAAEGHDGTPMTLRDYKACAERAYVTRLLDRHGADVRAAASEAGIS 447

Query: 515 K 515
           +
Sbjct: 448 R 448