Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  220 bits (560), Expect = 1e-61
 Identities = 136/334 (40%), Positives = 190/334 (56%), Gaps = 22/334 (6%)

Query: 194 IGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAI 253
           IGES AM K+ ++I + A++ + V+V G +G+GKELVA A+H  S R+  PF+ INCAA+
Sbjct: 141 IGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGALHRRSKRRDRPFIKINCAAL 200

Query: 254 PEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRT 313
           PE LLESELFG+ KGAF+GA   + G    A+GGTLF DE+G+MPL LQAKLLRVLE + 
Sbjct: 201 PEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQE 260

Query: 314 FRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIEL 373
             P+GG      + R V AT  NL + +    FR+DLYYR+   P+TLP L  R  D+ L
Sbjct: 261 VTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRINVVPVTLPPLRERGSDVAL 320

Query: 374 LSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEAS 433
           L+E F+R F   H  R   L+ +A   L  YD+PGNVREL++ +E       +G ++   
Sbjct: 321 LTERFLRRFCALHE-RQATLSEQARLALLAYDYPGNVRELRNAVEHAVLLCTEG-EIHVG 378

Query: 434 CFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALII 493
               R++     A ++ P A   +  +                    L + V++FE   I
Sbjct: 379 HLPERIRA----ATQSMPPACDDDAGDTPA----------------SLAEGVARFERRRI 418

Query: 494 SERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEI 527
            E L R  G + +AA  LGI ++ L  K  +L I
Sbjct: 419 MEALERTGGRKIQAADLLGISRKQLWLKLKELSI 452