Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  221 bits (564), Expect = 4e-62
 Identities = 149/406 (36%), Positives = 223/406 (54%), Gaps = 24/406 (5%)

Query: 122 SILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDIERDSA 181
           S+ ++M   HG +     A   K    F ++   L  +    +R LE+++   +   + A
Sbjct: 74  SLPVIMISGHGTIETAVAA-IKKGAHDFIEKPLSLEKVVIAAERALEMRELRRE---NQA 129

Query: 182 QRSLANALSRT--LIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSS 239
            RS   A S+   LIGESA M+++REQI   A +   V++ GE GTGKEL A AVH  S 
Sbjct: 130 LRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARAVHAGSQ 189

Query: 240 RKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPL 299
           R + P VA+NCAAIPE L+ESELFG+ KGAF+GA+S + G    A+ GTLFLDEIGDM L
Sbjct: 190 RATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDEIGDMSL 249

Query: 300 TLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPI 359
             QAK+LR+L+ ++F  +GG + +  D R+V+AT+ NL +Q+ +  FR+DLYYRL  +P+
Sbjct: 250 KTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYRLRVFPL 309

Query: 360 TLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIE- 418
           +LP L  R +DI  L + F+      H          A D L +Y +PGNVREL++ +E 
Sbjct: 310 SLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRELRNFVER 369

Query: 419 ---FGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNF 475
                  ++ D   +   C    L+ L   +  AT  A          + + A  G    
Sbjct: 370 MLILHAGESVDVEDLPPEC----LRDLSPSSDSATGTAA---------QSATATCGTGVD 416

Query: 476 AVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYK 521
            ++ D K A + FE   ++E+L    G+ ++ A+ +G+ +  L  K
Sbjct: 417 GIL-DFKAARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRK 461