Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  223 bits (568), Expect = 1e-62
 Identities = 143/386 (37%), Positives = 211/386 (54%), Gaps = 38/386 (9%)

Query: 140 ADFLKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAA 199
           AD  + + V  + W         E RRL ++        +  +R + N  +  L+G S  
Sbjct: 104 ADNEELVAVLEKAW---------EHRRLVVENE------ELRKRYVENDPTAPLVGASQV 148

Query: 200 MQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLE 259
           M ++R+ I  A  S+ +V++ GE+GTGKEL+A A+H+ S+R   P V +NCAA+P HLLE
Sbjct: 149 MHRMRDFIRQAGPSEATVLIMGESGTGKELIAQALHDASTRARQPLVKVNCAALPGHLLE 208

Query: 260 SELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGG 319
           SELFGY +GAF+GA  DK G    A GGTLFLDEIG++PL LQAKLLRVL+ R   PLGG
Sbjct: 209 SELFGYVRGAFTGAVKDKPGRFQLARGGTLFLDEIGELPLELQAKLLRVLQERVVEPLGG 268

Query: 320 KQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFV 379
            + +S D R+++AT+ +L  +V K  FR+DLY+RL    +  P L  R+ED+  L E  +
Sbjct: 269 VRPVSVDVRIIAATNRDLRREVAKGTFREDLYFRLNVLEVVSPPLRKRMEDLPQLVEELL 328

Query: 380 RVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRL 439
                ++   IR ++    + L ++ +PGNVREL++++E                 A  L
Sbjct: 329 GKLCRKNRKSIRCISADFFEALSRHSWPGNVRELENVLE----------------RALIL 372

Query: 440 QTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQ-AVSQFEALIISERLN 498
                L+ +A P  +  +      EP VA   +    V  D +  ++ + E   +   L+
Sbjct: 373 SRTDSLSADALPPQLFGD------EPQVADMQQERPVVDDDSRPCSLDEAEKGELLRALD 426

Query: 499 RFAGDRAKAAKSLGIPKRTLAYKCLK 524
              G R K A +LGI +RTL YK  K
Sbjct: 427 VHGGHREKTADALGISRRTLQYKLKK 452