Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  215 bits (547), Expect = 4e-60
 Identities = 120/319 (37%), Positives = 191/319 (59%), Gaps = 15/319 (4%)

Query: 151 QQWSLLNDMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSA 210
           Q  +L+  +   ++  L+  ++L+  +  S +R+L   +   ++G ++ ++++ +Q+ S 
Sbjct: 151 QNLALITALNLRDRNLLKENEALSK-QNVSLRRTLD--IQNGVVGANSGLKQVMQQVQSI 207

Query: 211 ANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAF 270
           A    +V++ GETG GKE++A A+HELS R   PF+ +NC AIP+ L++SELFGY KGAF
Sbjct: 208 AKINTTVLMLGETGCGKEVIANAIHELSERSGKPFIKVNCGAIPDTLIDSELFGYEKGAF 267

Query: 271 SGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLV 330
           +GADS K G   QANGGT+FLDEIG++PL+ Q +LLRVL++     +GG   +  D R+V
Sbjct: 268 TGADSRKVGYFEQANGGTIFLDEIGELPLSAQVRLLRVLQNSCITRVGGHDAVQLDIRIV 327

Query: 331 SATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHN-TR 389
           +ATH NL   V ++ FR+DL+YRL  +PI +P L  R  DI LL +HF+   + + N  +
Sbjct: 328 AATHRNLQAMVHREVFREDLWYRLAIFPIEIPSLRQRRTDIPLLVQHFIEQLSAKFNLPQ 387

Query: 390 IRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEA 449
           +  +    ++ L QY +PGNVREL +++E    Q   G                 LAP++
Sbjct: 388 LPRIAPEQLNILNQYGWPGNVRELINVLERAIIQHPAGP-----------LDFSFLAPKS 436

Query: 450 TPVAVSVETENVDLEPSVA 468
                +   + V ++PS A
Sbjct: 437 LEAVKTPSNQTVIIDPSHA 455