Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  218 bits (556), Expect = 3e-61
 Identities = 140/348 (40%), Positives = 204/348 (58%), Gaps = 18/348 (5%)

Query: 189 LSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAI 248
           L R+L+G S  +  +R  I   A S  +V+V G++GTGKE+VA  +H LS R+  PF+ +
Sbjct: 130 LFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSERRDGPFIPV 189

Query: 249 NCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRV 308
           NC AIP  LLESELFG+ KG+F+GA S ++G    A GGTLFLDEIGDMPL +Q KLLRV
Sbjct: 190 NCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLQMQVKLLRV 249

Query: 309 LESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARL 368
           L+ R F  +GG + +++D R+V+ATH +L   +   EFR+DLYYRL  +PI +P L+ R 
Sbjct: 250 LQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERK 309

Query: 369 EDIELLSEHFV-RVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADG 427
           +D+ LL +  V RV+N +   ++R    RAI+ LK++ + GNVREL +L+E        G
Sbjct: 310 DDVPLLLQELVSRVYN-EGRGKVR-FTQRAIESLKEHAWSGNVRELSNLVE-RLTILYPG 366

Query: 428 TQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEP------NFAVI--- 478
             V+ +    + + +    PE   V +S E +  D   S+  + EP       F      
Sbjct: 367 GLVDVNDLPVKYRHID--VPEYC-VEMSEEQQERDALASIFTSEEPVEIPETRFPSELPP 423

Query: 479 --HDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLK 524
              +LK  +++ E  +I + L       A+AA+ LGI + TL  K  K
Sbjct: 424 EGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRK 471