Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  521 bits (1342), Expect = e-152
 Identities = 310/849 (36%), Positives = 492/849 (57%), Gaps = 32/849 (3%)

Query: 10  IAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQ 69
           I +L ++ +LAL  A SL +   HP +   + +  +L+     ++ +L Q G +V+ +++
Sbjct: 3   IDRLTSKLQLALSDAQSLAVGLDHPGIEPAHLMQAMLEQQGGSIKPLLMQVGFDVNSLRK 62

Query: 70  AIASTYSREQVLDTYPA---FSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADR 126
            +A    +   +         S  L  LL +A  L+  + +Q  + S  + LAA+   D 
Sbjct: 63  ELAKELDQLPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQF-ISSELVLLAAM---DE 118

Query: 127 YLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLGRFCTNV 186
                 + L +G++++ L+        ++     A  D N     QA     L ++  ++
Sbjct: 119 NSKLGKLLLGQGVSKKALENAI-----NNLRGGEAVNDANHEESRQA-----LDKYTVDL 168

Query: 187 TEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKV 246
           T++A  G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A+ EGLA R++ G+V
Sbjct: 169 TKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEV 228

Query: 247 PTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGN 306
           P  L+   L SLD+G L AGA  +GEFE+RLK +++ + +    IILFIDE HT++G+G 
Sbjct: 229 PDGLKGKRLLSLDMGALIAGAKYRGEFEERLKALLNELSKQEGQIILFIDELHTMVGAGK 288

Query: 307 QEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVD 366
            EG  DA N+LKPALARGEL  V ATT  EY++Y EKD AL RRFQ V ++EP+ +  + 
Sbjct: 289 GEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVEEPSEEDTIA 348

Query: 367 ILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTP 426
           ILRGL   YE  H V ITD A+ AAA+LS RYI+ RQLPDKAID++D A +RI + + + 
Sbjct: 349 ILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSK 408

Query: 427 PKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQ 486
           P+ L  LE    Q ++E   L++      E   +RL+ L+ + +  E E + L + W  +
Sbjct: 409 PEVLDRLERRLIQLKVESQALKKE---SDEAAKKRLERLQEEIVRHEREYSDLEEIWNSE 465

Query: 487 KSLVESIIALRAEL----MELSQAQEQDPDHLLV-----VRTALQEQYQALDAIDHAE-R 536
           K+ V+    ++ ++     EL  A+ +   + +      V   L+   Q +D    +E +
Sbjct: 466 KAEVQGSAQIQQKIEQSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGKSENQ 525

Query: 537 LMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLL 596
           L+  +V  ++IAEV++ WTG+PV +M   E  K+  + S+L Q + GQE A+  +   + 
Sbjct: 526 LLRSKVTEEEIAEVVSKWTGIPVSKMLEGERDKLLKMESLLHQRVIGQEEAVVAVSNAVR 585

Query: 597 TARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSR 656
            +RA L  P RP G+F+ +GP+GVGKTE    LAE L+  ++ +  I+MSE+ EKH+V+R
Sbjct: 586 RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645

Query: 657 LIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGR 716
           LIG+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  + G + D  GR
Sbjct: 646 LIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLEDGRLTDSHGR 705

Query: 717 VIDCQNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARM-EVIPYLPLG 775
            +D +N V  +TSNLG   I +   +      A+   ++  F+P  + R+ EV+ + PL 
Sbjct: 706 TVDFRNTVIVMTSNLGSTQIQELVGDREAQRAAVMDAISTHFRPEFINRVDEVVIFEPLA 765

Query: 776 KEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLL 835
           ++ +A I   +L RL     T    ++ + +  +D++++       GAR L+  I+  + 
Sbjct: 766 RDQIAGITEIQLGRLRSRL-TERELKLQLSDEALDKLIAVGYDPVYGARPLKRAIQRWIE 824

Query: 836 PPVSLALLN 844
            P++  +L+
Sbjct: 825 NPLAQLILS 833