Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  679 bits (1753), Expect = 0.0
 Identities = 388/895 (43%), Positives = 550/895 (61%), Gaps = 40/895 (4%)

Query: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60
           M  I    L  KLN+ +  A+E A   C  R +P V L ++   LL    SD+  +++Q 
Sbjct: 1   MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLQDSDLHRIIRQF 60

Query: 61  GLEVDQVKQAIASTYSREQVLDTYPAFSPLLVEL-------LQEAWLLSSTELEQAELRS 113
            +E  ++ + +       + LD  P  S  + +L       ++  W+  S    ++++R+
Sbjct: 61  NIEPARLARDLT------EALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRT 114

Query: 114 GAIFLAAL-TRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTD-------- 164
           G + L  L T + R+    L S F+ +  E L + F   + DS E A+  +D        
Sbjct: 115 GYLVLGILKTPSLRHALLGLSSEFDKVKVEALSERFDEYVGDSPENALTASDGFNAGAVP 174

Query: 165 ---KNAANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPI 221
                A  P     +  L RF  ++TEQAR+G+LDP++ R+ E+  +VDIL RRR+NNPI
Sbjct: 175 GEASGAMAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPI 234

Query: 222 VVGEAGVGKSAMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVI 281
           + GEAGVGK+A++EG ALR+VAG VP  L++VEL SLD+G LQAGAS+KGEFE+RL+ VI
Sbjct: 235 LTGEAGVGKTAVVEGFALRIVAGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVI 294

Query: 282 DAIKQSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYF 341
           + ++ SPKPIILFIDEAHTL+G+G   G  DAANLLKPALARG L TVAATTW EYKK+ 
Sbjct: 295 EDVQASPKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHI 354

Query: 342 EKDPALTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISG 401
           EKDPALTRRFQ+V++ EP+ D+A+ ++RG+ S  EK H V I D+AL+A+ +LS RYI  
Sbjct: 355 EKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEKHHQVQILDEALEASVKLSHRYIPA 414

Query: 402 RQLPDKAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSER 461
           RQLPDK++ +LDTACAR+AI++   P  +          + E+ ++ R   +G  + S +
Sbjct: 415 RQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREHAIGVVIGSRQ 474

Query: 462 LDVLRNQELADEAEK-AALTQSWQQQKSLVESIIALRAELME------LSQAQEQDPDHL 514
                   L+ E E+ A L   W ++K+LV+ ++A RA L E         A E   +  
Sbjct: 475 TQT--ESLLSAERERLAELESRWAEEKTLVDELLATRATLRERVGVVDSEDASEAADNES 532

Query: 515 LVVRTALQEQYQALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLT 574
             +R  L +  Q L A+     L+ P VD   +A V+ADWTG+PV +M  +EL  + +L 
Sbjct: 533 HALREKLVDLQQRLTALQGETPLILPTVDYQAVASVVADWTGIPVGRMARNELETVLNLD 592

Query: 575 SILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLY 634
             L + I GQ+ A++ I + + T+RA L  P +P G F+L G SGVGKTET + LAE +Y
Sbjct: 593 QHLKKRIIGQDHALQMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMY 652

Query: 635 GGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAH 694
           GG+Q + TINMSE+QE HTVS L G+PPGY+GYGEGGVLTEA+R+ PYSVVLLDEVEKAH
Sbjct: 653 GGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAH 712

Query: 695 PEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDY------ADEPAKLDE 748
           P+V  IF+Q FDKG + DGEGRVID +N +  LT+N G + I D         EP ++ +
Sbjct: 713 PDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTELIADVCKDPQNVPEPEEIAK 772

Query: 749 ALYPELAAFFKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESL 808
           AL   L   F PALL R+  IPY PL  E+L  I R +L R++K  ++ +      ++++
Sbjct: 773 ALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKAITRLQLNRIKKRVESTHKVAFDYDDAV 832

Query: 809 IDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGE 863
           ID I+SR T +E+G RM++ I+   LLP +S   L ++ E   +  +R+ A   E
Sbjct: 833 IDLIVSRCTETESGGRMIDTILTNSLLPDMSREFLTRMLEGKALAGVRINAVDNE 887