Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  724 bits (1870), Expect = 0.0
 Identities = 410/862 (47%), Positives = 562/862 (65%), Gaps = 24/862 (2%)

Query: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60
           MI ++L  LI  L+A+++  LE++A  C+ R   +V +E  +  LL+ P   +   L+ A
Sbjct: 1   MINVDLQQLIQALDAETRSDLERSAERCVARGADKVLVEDLMLGLLERPQGLLARALQDA 60

Query: 61  GLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAA 120
            +  D++  A+      E      P F+P LV+ LQ+A L+++ EL  +++   A+ LA 
Sbjct: 61  QVSADELSAALQPRM--EHSASRNPVFAPELVQWLQDALLVANLELGCSQVGQAALILAL 118

Query: 121 LTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLG 180
           L    RY      +L   ++ + L+      LS   ++ V     ++A P     ++ L 
Sbjct: 119 LRNPLRYAGSAYQALLTRLSADRLRD---FALSQQTQSVV----DHSAKP----GDSLLA 167

Query: 181 RFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALR 240
           RF  ++T QAR G+LDPVL R  E+  M+DIL RRRKNNPIVVGEAGVGK+A++EGLALR
Sbjct: 168 RFTHDLTRQAREGQLDPVLCRGGEIRQMIDILVRRRKNNPIVVGEAGVGKTAIVEGLALR 227

Query: 241 VVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHT 300
           + AG+VP+ L+ VEL SLD+G LQAGAS+KGEFE+RLKGVID +K SPK IILFIDEAHT
Sbjct: 228 IAAGEVPSALEGVELLSLDMGLLQAGASIKGEFERRLKGVIDEVKASPKSIILFIDEAHT 287

Query: 301 LIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPT 360
           LIG+G   GG+DAANLLKPALARGEL T+AATTW EYKKYFEKDPAL RRFQ V+L EPT
Sbjct: 288 LIGAGGNTGGADAANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPT 347

Query: 361 IDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIA 420
           + +AV ILRGL  VYE +H + + DDA+ AAA+LSARY++GRQLPDKA+DVLDTACAR+ 
Sbjct: 348 VSEAVTILRGLARVYENSHGIYLRDDAVVAAAQLSARYLTGRQLPDKAVDVLDTACARVR 407

Query: 421 INMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALT 480
           I++   P+ L  L     + + +   L R    G  +D + L+ L  +  A E E+  L 
Sbjct: 408 ISLAAAPQSLERLRGEWAEGERQRQALRRDAQAGLSIDLQALEALEVRLEAIEDERRTLE 467

Query: 481 QSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTALQEQYQALDAIDHAERLMHP 540
             W +Q+ L E +++LR +L +  +A    P  +  +  AL E Y  L A    ERL+  
Sbjct: 468 IQWTEQRILAERLLSLRQQLAKAREASVDHPLSVEALEAALHETYGTLVAAQVHERLVSF 527

Query: 541 QVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARA 600
           +V    +AEVI+ WTGVP+ Q+  +   K+    + L   I+GQE A+  + R +  A A
Sbjct: 528 EVCPRLVAEVISAWTGVPLAQLAREHNLKVASFATELRARIRGQEPAVRALDRAMRAAAA 587

Query: 601 DLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGS 660
            L +P  P G FLLVGPSGVGKTET   LA+ LYGG +F+TT+NM+E+QEKHTVSRLIG+
Sbjct: 588 GLSKPDAPVGVFLLVGPSGVGKTETAHGLADLLYGGDRFITTLNMAEFQEKHTVSRLIGA 647

Query: 661 PPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDC 720
           PPGYVG+GEGG+LTEA+R+ PYSVVLLDEVEKA P+VLN+FYQ FDKG   DGEGR ID 
Sbjct: 648 PPGYVGFGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGLANDGEGREIDF 707

Query: 721 QNIVFFLTSNLGYQTIVDYADEPAK-----LDEALYPELAAFFKPALLARMEVIPYLPLG 775
           +N +  +TSNLG + I +  +  AK     L+E++ P L+  FKPALLARM V+PY P+ 
Sbjct: 708 RNTLILMTSNLGSERINELCENGAKPSAECLEESIRPILSQHFKPALLARMCVVPYYPVS 767

Query: 776 KEVLAQIVRGKLARL-EKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQL 834
             VL ++V  KL RL E+L + +          L++ ++ R +R++ GAR+++ +++  L
Sbjct: 768 GPVLRELVEVKLDRLGERLHRRQLGFSYC--GHLVNHLVERCSRNDRGARLIDQLLDLHL 825

Query: 835 LPPVSLALLNKLAERAPVERIR 856
           +P   L +   LA  A  ER+R
Sbjct: 826 MP---LIVDRLLAAMAGGERLR 844