Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., clpB protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  504 bits (1298), Expect = e-147
 Identities = 324/878 (36%), Positives = 494/878 (56%), Gaps = 52/878 (5%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           ++  + ++A+  A SL + R H  +   + +  LL+     +  +L Q+G+ V  ++  +
Sbjct: 5   RMTNKFQIAISDAQSLALGRDHQFIEPVHLMMALLNQDGGSIHPLLTQSGIRVSNLRSLL 64

Query: 72  ASTYSREQVLDTYPA---FSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYL 128
           +    R+  ++        S  L+ LL     LS    ++  + S    LAAL   D   
Sbjct: 65  SQELERQPQVEGTGGDVQLSQALIRLLNLCDKLSQKRKDKY-ISSELFVLAALEGND--- 120

Query: 129 SFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLGRFCTNVTE 188
           +   I    G  +E L++    I +          D NA +  QA     L ++  ++TE
Sbjct: 121 TLAQILKQAGATKERLEQTIEEIRAGQKVD-----DPNAEDNRQA-----LKKYTVDLTE 170

Query: 189 QARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKVPT 248
           +A  G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A++EGLA R+V G+VP 
Sbjct: 171 RAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPE 230

Query: 249 QLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQE 308
            ++N  + SLD+G L AGA  +GEFE+RLK V++ + Q    +ILFIDE HT++G+G  +
Sbjct: 231 GIKNKRVLSLDMGALVAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKSD 290

Query: 309 GGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDIL 368
           G  DA N+LKPALARGEL  V ATT  EY++Y EKD AL RRFQ V +DEPT++  + IL
Sbjct: 291 GAMDAGNMLKPALARGELHCVGATTLDEYRQYVEKDAALERRFQKVLVDEPTVEDTIAIL 350

Query: 369 RGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPPK 428
           RGL   YE  H+V ITD A+ AAA +S RY+S R+LPDKAID++D A + I + + + P+
Sbjct: 351 RGLKERYELHHHVEITDPAIVAAASMSHRYVSDRKLPDKAIDLIDEAASSIRMQIDSKPE 410

Query: 429 RLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQKS 488
            L  LE    Q +LE   L +      E   +RL+ LR++    EA+   L + W+ +K+
Sbjct: 411 SLDRLERRAIQLKLEEQALAKE---NDEASRKRLEHLRHELKEVEAKANELNEIWRTEKA 467

Query: 489 LVESIIALRAEL----MELSQAQE-QDPDHLLVVRTA-LQEQYQALDAIDHAE----RLM 538
            +     ++A+L    M+L  A+   D   +  ++   + E  + LD    AE    +L+
Sbjct: 468 ALAGTQHIKADLEQARMDLEVARRASDLTRMSELQYGRIPELEKQLDLAAQAEMQDMKLL 527

Query: 539 HPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTA 598
             +V   +IAEV++  TG+PV +M   E  K+  +   L + + GQ  A++ +   +  +
Sbjct: 528 RNKVTDVEIAEVLSKATGIPVAKMLEGEREKLLQMEHALHERVIGQNEAVDAVANAIRRS 587

Query: 599 RADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLI 658
           RA L  P RP G+FL +GP+GVGKTE    LA+ L+  +  L  I+MSE+ EKH+VSRL+
Sbjct: 588 RAGLADPNRPIGSFLFLGPTGVGKTELCKSLAKFLFDTESALVRIDMSEFMEKHSVSRLV 647

Query: 659 GSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVI 718
           G+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  D G + DG+GR +
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTV 707

Query: 719 DCQNIVFFLTSNLGYQTI------VDYADEPAKLDEALYPELAAFFKPALLARM-EVIPY 771
           D +N V  +TSNLG   I      +DY    A++ + +   +   F+P  L R+ E + +
Sbjct: 708 DFRNTVVIMTSNLGSDIIQERFGTLDY----AQMKQEVMNVVVHSFRPEFLNRIDETVVF 763

Query: 772 LPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRS----ENGARMLE 827
            PL  E +  I   ++  L K       AE   E  L DE L+   R+      GAR L+
Sbjct: 764 HPLDAEHIKNIASIQIESLRKRL-----AEREFELELSDEALAFIARAGFDPVYGARPLK 818

Query: 828 AIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFI 865
             ++ ++  P++  LL    E  P + IR+  +  E +
Sbjct: 819 RALQQEVENPLAQKLLR--GEFIPGKPIRVDCQDAELV 854