Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATPase (RefSeq) from Shewanella loihica PV-4

 Score =  505 bits (1301), Expect = e-147
 Identities = 322/872 (36%), Positives = 489/872 (56%), Gaps = 44/872 (5%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           ++  + ++A+  A SL + R H  +   + +  LL+     +  +L QAG+ V  ++ A+
Sbjct: 5   RMTNKFQIAISDAQSLALGRDHQFIEPIHLMMALLNQDGGSIHPLLTQAGISVSTLRSAL 64

Query: 72  ASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRS-GAIFLAALTRADRYLSF 130
           +    R                L Q        +L QA +R        A  R D+Y+S 
Sbjct: 65  SQELER----------------LPQIEGTGGDVQLSQALIRLLNLCDKLAQKRKDKYISS 108

Query: 131 KLISL--FEGINR--ENLKKHFAM--ILSDSAETAVAKTDKNAANPLQAAAETPLGRFCT 184
           +L  L   EG +   + LKK  A   +L  + E    +  KN  +P        L +F  
Sbjct: 109 ELFVLAALEGSDALAQCLKKSGATKELLEKTIEEV--RLGKNIDDPNAEDQRQALKKFTV 166

Query: 185 NVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAG 244
           ++TE+A  G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A++EGLA R++ G
Sbjct: 167 DLTERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING 226

Query: 245 KVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGS 304
           +VP  ++N  + SLDLG L AGA  +GEFE+RLK V++ + Q    +ILFIDE HT++G+
Sbjct: 227 EVPEGIKNKRVLSLDLGALVAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGA 286

Query: 305 GNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQA 364
           G  +G  DA N+LKPALARG+L  V ATT  EY++Y EKD AL RRFQ V +DEP+++  
Sbjct: 287 GKSDGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDT 346

Query: 365 VDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMT 424
           + ILRGL   YE  H+V ITD A+ AAA +S RYIS R+LPDKAID++D A + I + + 
Sbjct: 347 IAILRGLKERYELHHHVEITDPAIVAAASMSHRYISDRKLPDKAIDLIDEAASSIRMQID 406

Query: 425 TPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQ 484
           + P+ L  LE    Q +LE   L +      E    RL  LR++    EA+ A L + W 
Sbjct: 407 SKPEPLDRLERRTIQLKLEEQALSKE---SDEASLRRLSTLRSELAEVEAKAAELNEVWH 463

Query: 485 QQKSLVESIIALRAEL----MELSQAQEQ-DPDHLLVVRTA-LQEQYQALDAIDHAE--- 535
            +K+ +     ++A+L    M+L  A+   D   +  ++   + E  + LD    AE   
Sbjct: 464 TEKAALAGTQHIKADLEQARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLAAQAEMQD 523

Query: 536 -RLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRH 594
             L+  +V   +IAEV++  TG+PV +M   E  K+ H+   L   + GQ  A++ +   
Sbjct: 524 MTLLRNKVSDVEIAEVLSKATGIPVSKMLEGEKEKLLHMEEALHTRVIGQNEAVDAVANA 583

Query: 595 LLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTV 654
           +  +RA L  P RP G+FL +GP+GVGKTE    LA+ L+  +  +  I+MSE+ EKH+V
Sbjct: 584 IRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLAKFLFDTEAAMVRIDMSEFMEKHSV 643

Query: 655 SRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGE 714
           SRL+G+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  D G + DG+
Sbjct: 644 SRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQ 703

Query: 715 GRVIDCQNIVFFLTSNLGYQTIVDY--ADEPAKLDEALYPELAAFFKPALLARM-EVIPY 771
           GR +D +N V  +TSNLG   I +       A++   +   +   F+P  L R+ E + +
Sbjct: 704 GRTVDFRNSVVIMTSNLGSDVIQERFGIASYAEMKSEVMNVVTHSFRPEFLNRIDESVVF 763

Query: 772 LPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIE 831
            PL  E +A I + ++  L+     + + E+ + +  +  I         GAR L+  ++
Sbjct: 764 HPLESEHIAHIAQIQIDNLKARLAEK-DFELEVSDDALALIAQAGFDPVYGARPLKRALQ 822

Query: 832 GQLLPPVSLALLNKLAERAPVERIRLAAEAGE 863
            ++  P++  LL+   E  P   I++ A  GE
Sbjct: 823 QEVENPLAQKLLS--GELLPGAPIKVDAAGGE 852