Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., clpB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  502 bits (1292), Expect = e-146
 Identities = 327/881 (37%), Positives = 487/881 (55%), Gaps = 54/881 (6%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           ++  + +LA+  A SL + R H  +   + +  LL+     +  +L QAG+ V  ++  +
Sbjct: 5   RMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSALRSLL 64

Query: 72  ASTYSR-EQVLDTYP--AFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYL 128
           +    R  QV  T      S  L+ LL     L+    ++  + S    LAAL   D   
Sbjct: 65  SQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKY-ISSELFVLAALEGCD--- 120

Query: 129 SFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLGRFCTNVTE 188
                +L + + +    K       +         D NA +  QA     L +F  ++TE
Sbjct: 121 -----ALAQCLKKSGATKELMEQTIEQVRGGQKVDDPNAEDQRQA-----LKKFTVDLTE 170

Query: 189 QARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKVPT 248
           +A  G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A++EGLA R+V G+VP 
Sbjct: 171 RAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPE 230

Query: 249 QLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQE 308
            ++N  + SLD+G L AGA  +GEFE+RLK V++ + Q    +ILFIDE HT++G+G  +
Sbjct: 231 GIKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKGD 290

Query: 309 GGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDIL 368
           G  DA N+LKPALARG+L  V ATT  EY++Y EKD AL RRFQ V +DEP+++  + IL
Sbjct: 291 GAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAIL 350

Query: 369 RGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPPK 428
           RGL   YE  H+V ITD A+ AAA +S RY+S R+LPDKAID++D A + I + M + P+
Sbjct: 351 RGLKERYELHHHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMDSKPE 410

Query: 429 RLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQKS 488
            L  LE    Q +LE   L +      E    RLD L+ +    EA+ + L++ W+ +K+
Sbjct: 411 SLDRLERRAIQLKLEEQALAKE---NDEASRRRLDHLQEELRDVEAKASELSEIWRTEKA 467

Query: 489 LVESIIALRAELMELSQAQEQDPDHLLVVRTA-------------LQEQYQALDAIDHAE 535
            +     ++A+L       EQ    L V R A             + E  + LD    AE
Sbjct: 468 ALAGTQHIKADL-------EQARLDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAE 520

Query: 536 ----RLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERI 591
                L+  +V   +IAEV++  TG+PV +M   E  K+  +   L + + GQ  A++ +
Sbjct: 521 MQDMTLLRNKVTDLEIAEVLSKATGIPVSKMLEGEREKLLQMEVALHERVIGQNEAVDAV 580

Query: 592 HRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEK 651
              +  +RA L  P RP G+FL +GP+GVGKTE    LA  L+  +  L  I+MSE+ EK
Sbjct: 581 ANAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLARFLFDSESALVRIDMSEFMEK 640

Query: 652 HTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIA 711
           H VSRL+G+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  D G + 
Sbjct: 641 HAVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLT 700

Query: 712 DGEGRVIDCQNIVFFLTSNLGYQTIVDYAD--EPAKLDEALYPELAAFFKPALLARM-EV 768
           DG+GR +D +N V  +TSNLG   I +       +++  A+   +   F+P  L R+ E 
Sbjct: 701 DGQGRTVDFRNTVIIMTSNLGSDIIQEGFGHLSYSEMKSAVMNVVTHSFRPEFLNRIDES 760

Query: 769 IPYLPLGKEVLAQIVRGKLARLEK-LFKTRYNAEVVIEE-SLIDEILSRATRSENGARML 826
           + + PL  E +  I   ++A L K L +  Y  E+  E  SLI EI         GAR L
Sbjct: 761 VVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEI---GFDPVYGARPL 817

Query: 827 EAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIGE 867
           +  ++ ++  P++  LL    +  P + I+++   GE + E
Sbjct: 818 KRALQQEMENPLAQKLLR--GDLLPGKPIKVSCVDGELVFE 856