Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 871 a.a., ATPase AAA-2 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  485 bits (1249), Expect = e-141
 Identities = 307/841 (36%), Positives = 476/841 (56%), Gaps = 40/841 (4%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           K   +S+  L+ A ++ +   H  +  E+ L  LLD+       ++ +AG +  +V++A+
Sbjct: 5   KFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARVREAL 64

Query: 72  ASTYSREQVLDTYPAFSPL---LVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYL 128
           A+   +   +    A + L     ++L EA  L++   +        +   A+T++    
Sbjct: 65  AAALDKLPKVSGDGAQTYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAVTKSGAKT 124

Query: 129 SFKLISLFEGINRENLKKHFAMILSD-SAETAVAKTDKNAANPLQAAAETPLGRFCTNVT 187
           + +      G++ + L      I    +A+TA A++  +A           L +F  ++T
Sbjct: 125 ALEA----GGVSAQALNGAINDIRKGRTADTASAESGYDA-----------LKKFARDLT 169

Query: 188 EQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKVP 247
           E A +G++DP++ R+ E+   + +L RR KNNP+++GE GVGK+A+ EGLALR++ G VP
Sbjct: 170 EAAADGKIDPIIGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVP 229

Query: 248 TQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQ 307
             L+N +L +LD+G L AGA  +GEFE+RLK V+  +  +   IILFIDE HTL+G+G  
Sbjct: 230 ESLRNKKLMALDMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKA 289

Query: 308 EGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDI 367
           +G  DA+NLLKPALARGEL  V ATT  EY+KY EKD AL RRFQ V + EPT++  V I
Sbjct: 290 DGAMDASNLLKPALARGELHCVGATTLDEYRKYVEKDAALARRFQPVMVQEPTVEDTVSI 349

Query: 368 LRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPP 427
           LRG+   YE  H V I+D AL AAA LS RYI+ R LPDKAID++D A +R+ + + + P
Sbjct: 350 LRGIKEKYELHHGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASRLRMEVDSKP 409

Query: 428 KRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAA-LTQSWQQQ 486
           + L  L+    Q+Q+E + L   +        ERL  L  ++L+D  +++A +T  WQ +
Sbjct: 410 EELDALDREILQKQIEAEAL---RLEDDAASRERLASL-EKDLSDLQQRSAEMTAQWQSE 465

Query: 487 -------KSLVESIIALRAELMELSQAQ---EQDPDHLLVVRTALQEQYQALDAIDHAER 536
                  + L E +   RAEL E+++ +    +  +    V   L++Q    ++    + 
Sbjct: 466 RDKLASARDLKEHLDKARAEL-EIAKREGNLARAGELSYGVIPGLEKQLAEAES-GEGDV 523

Query: 537 LMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLL 596
           ++   V  +QIA V+  WTG+P  +M   E  K+  +   +G+ + GQ+TA+  +   + 
Sbjct: 524 MVEEAVRPEQIASVVERWTGIPTSKMLEGEREKLLRMEEEIGRRVIGQKTAVNAVANAVR 583

Query: 597 TARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSR 656
            ARA L    RP G+FL +GP+GVGKTE    +AE L+     +  I+MSE+ EKH V+R
Sbjct: 584 RARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 643

Query: 657 LIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGR 716
           LIG+PPGYVGY EGGVLTEA+R+ PY VVL DEVEKAHP+V N+  Q  D G + DG+GR
Sbjct: 644 LIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGR 703

Query: 717 VIDCQNIVFFLTSNLGYQTIVDYAD--EPAKLDEALYPELAAFFKPALLARM-EVIPYLP 773
            +D +  +  LTSNLG Q +    D  + +     +   + A F+P  L R+ E I +  
Sbjct: 704 TVDFKQTLIVLTSNLGAQALSQLPDGADASAAKRDVMDAVRAHFRPEFLNRLDETIIFDR 763

Query: 774 LGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQ 833
           L ++ +  IV  +LARL+K    R    + ++++    +         GAR L+ +I+  
Sbjct: 764 LVRDDMDAIVDIQLARLQKRLDAR-KLTLALDDAARSWLADEGYDPVFGARPLKRVIQRA 822

Query: 834 L 834
           L
Sbjct: 823 L 823