Pairwise Alignments

Query, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATPase (RefSeq) from Shewanella sp. ANA-3

 Score =  502 bits (1293), Expect = e-146
 Identities = 330/878 (37%), Positives = 494/878 (56%), Gaps = 48/878 (5%)

Query: 12  KLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAI 71
           ++  + +LA+  A SL + R H  +   + +  LL+     +  +L QAG+ V     A+
Sbjct: 5   RMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVS----AL 60

Query: 72  ASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRS-GAIFLAALTRADRYLSF 130
            S  S+E            L  L Q        +L Q  +R        A  R D+Y+S 
Sbjct: 61  RSLLSQE------------LERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKYISS 108

Query: 131 KLISL--FEGINR--ENLKKHFAM--ILSDSAETAVAKTDKNAANPLQAAAETPLGRFCT 184
           +L  L   EG +   + LKK  A   +L  + E    +  +N  +P        L +F  
Sbjct: 109 ELFVLAALEGSDALAQCLKKSGATKELLEQTIEQV--RGGQNVDDPNAEDQRQALKKFTV 166

Query: 185 NVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAG 244
           ++TE+A  G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A++EGLA R+V G
Sbjct: 167 DLTERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNG 226

Query: 245 KVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGS 304
           +VP  ++N  + SLD+G L AGA  +GEFE+RLK V++ + Q    +ILFIDE HT++G+
Sbjct: 227 EVPEGIKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGA 286

Query: 305 GNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQA 364
           G  +G  DA N+LKPALARG+L  V ATT  EY++Y EKD AL RRFQ V +DEP+++  
Sbjct: 287 GKGDGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDT 346

Query: 365 VDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMT 424
           + ILRGL   YE  H+V ITD A+ AAA +S RY+S R+LPDKAID++D A + I + M 
Sbjct: 347 IAILRGLKERYELHHHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMD 406

Query: 425 TPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQ 484
           + P+ L  LE    Q +LE   L +      E    RL+ LR +    EA+ + L + W+
Sbjct: 407 SKPESLDRLERRAIQLKLEEQALAKE---NDEASRRRLEHLRVELHEVEAKASELNEIWR 463

Query: 485 QQKSLVESIIALRAEL----MELSQAQEQ-DPDHLLVVRTA-LQEQYQALDAIDHAE--- 535
            +K+ +     ++A+L    M+L  A+   D   +  ++   + E  + LD    AE   
Sbjct: 464 TEKAALAGTQHIKADLEQARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQD 523

Query: 536 -RLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRH 594
             L+  +V   +IAEV++  TG+PV +M   E  K+  +   L + + GQ  A++ +   
Sbjct: 524 MTLLRNKVTDLEIAEVLSKATGIPVSKMLEGEREKLLQMEVALHERVIGQNEAVDAVANA 583

Query: 595 LLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTV 654
           +  +RA L  P RP G+FL +GP+GVGKTE    LA+ L+  +  L  I+MSE+ EKH V
Sbjct: 584 IRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLAKFLFDTESALVRIDMSEFMEKHAV 643

Query: 655 SRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGE 714
           SRL+G+PPGYVGY EGG LTEA+R+ PYSV+LLDEVEKAHP+V NI  Q  D G + DG+
Sbjct: 644 SRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQ 703

Query: 715 GRVIDCQNIVFFLTSNLGYQTIVDYAD--EPAKLDEALYPELAAFFKPALLARM-EVIPY 771
           GR +D +N V  +TSNLG   I +       +++  A+   +   F+P  L R+ E + +
Sbjct: 704 GRTVDFRNTVIIMTSNLGSDIIQEGFGHLSYSEMKSAVMNVVTHSFRPEFLNRIDESVVF 763

Query: 772 LPLGKEVLAQIVRGKLARLEK-LFKTRYNAEVVIEE-SLIDEILSRATRSENGARMLEAI 829
            PL  E +  I   ++A L K L +  Y  E+  E  SLI EI         GAR L+  
Sbjct: 764 HPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEI---GFDPVYGARPLKRA 820

Query: 830 IEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIGE 867
           ++ ++  P++  LL    +  P + I+++   GE + E
Sbjct: 821 LQQEMENPLAQKLLR--GDLLPGKPIKVSCAGGELVFE 856