Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., Outer membrane protein ImpK/VasF, OmpA/MotB domain from Pseudomonas fluorescens FW300-N1B4

 Score =  117 bits (293), Expect = 4e-31
 Identities = 69/225 (30%), Positives = 106/225 (47%)

Query: 32  RGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILM 91
           + +  N L  AA PL  L  R+R          +  Q +  ++  E      G     ++
Sbjct: 44  KAEGLNPLESAAGPLLALLTRLRNTIAHPAPASLRAQLLAYLRQFEERAEAAGVVRNDVL 103

Query: 92  AYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQA 151
             RY LC  LDE+V+ T WG +S W + S+L   HNE WGGEKVF +L      P     
Sbjct: 104 LARYALCTALDEAVLSTPWGGASDWGKQSLLITVHNEAWGGEKVFQLLEHCLQSPRERLY 163

Query: 152 LLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRAK 211
           LL  +Y C+ LGFEG+YRVM  G+++ E +  R   ++ S      ++L+     V  A+
Sbjct: 164 LLELLYLCMCLGFEGRYRVMNDGRSQLEALRERTSAVIRSARGDYERELSPHWRGVTVAR 223

Query: 212 YTLSRQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQI 256
             L++ MP W   A  + L + L  G    L + +  V   ++ +
Sbjct: 224 DRLAQFMPPWIAVAIGVALLLALLFGLRLKLAADAEPVFKNIHAL 268