Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., type IV / VI secretion system protein, DotU family from Pseudomonas stutzeri RCH2

 Score =  140 bits (354), Expect = 2e-38
 Identities = 79/215 (36%), Positives = 124/215 (57%), Gaps = 2/215 (0%)

Query: 37  NVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAYRYI 96
           N L+ AA+PL    +R +   E ++++ ++ Q    IK  E      G E + +MA RY+
Sbjct: 61  NPLVAAASPLLSEVVRFKHSLESEDLQALHGQLSSAIKLFEHRALHDGAESSQVMAARYV 120

Query: 97  LCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQALLAFI 156
           LC  LDE+V+ T WG  S W++ S+LS FHNET+GGEK F +L RL   P ++  +L  +
Sbjct: 121 LCTVLDEAVVTTPWGNESEWSQMSLLSSFHNETFGGEKFFQLLERLSRNPVKHLPMLELM 180

Query: 157 YHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRAKYTLSR 216
           Y CL LGFEGKYRV+  G  E E V   L++ +  +    P++L+   + +   +  L R
Sbjct: 181 YLCLSLGFEGKYRVLPRGMLELEAVRDSLYRQIRQMRGDIPRELSPHWEGLKDTRRRLVR 240

Query: 217 QMPVWSVFAGFIVLWVG-LFLGYSYVLHSKSSDVL 250
            +P W V A F ++ +G ++ G+++VL  +   VL
Sbjct: 241 IVPWWMV-ALFTLMCLGVIYGGFAWVLGEQRESVL 274