Pairwise Alignments

Query, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 3/226 (1%)

Query: 34  DNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAY 93
           D  N L++AA PL      +    +   I+Q++    +E++  +    +       ++  
Sbjct: 39  DATNPLLEAARPLLRALADMPDNLDLTAIDQLHLLLKQEVRTFQRLCEQANIRRDHMIGA 98

Query: 94  RYILCAFLDESVMGTEWGASSL---WAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQ 150
           RY L   LDE+   T WG       W    + + FH +  GG+KV+ ++ RL  EP  + 
Sbjct: 99  RYCLATALDEAAGKTVWGQRETGVEWLRKGLATEFHEDRQGGDKVYLLIGRLMNEPREHL 158

Query: 151 ALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRA 210
            LL  IY  L LGF G+YR    G  + + V  RL+  + +     P  L+       R 
Sbjct: 159 DLLEVIYRILSLGFMGRYRHEADGARKHDAVRQRLYNEIQTQRGVVPIALSPRVQSDSRG 218

Query: 211 KYTLSRQMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQI 256
           +       PV   FA   ++ +GLF  + Y L +  + V  Q+  I
Sbjct: 219 QRLSVYDFPVRITFAVLGLILLGLFGWFKYHLLNHGASVEKQITDI 264