Pairwise Alignments

Query, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., protein of unknown function DUF876 from Pseudomonas syringae pv. syringae B728a

 Score =  171 bits (434), Expect = 3e-47
 Identities = 131/458 (28%), Positives = 227/458 (49%), Gaps = 29/458 (6%)

Query: 1   MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRI 60
           M  ++RV+W+EG+F+ PQHFQ Q  + ++ L E     + + +G+  L ++ E L+ G +
Sbjct: 1   MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAESTLRSTPFHWGVQTLEVDVEALATGSL 60

Query: 61  AIERAVGVMPDGTTFRIPQEDHLPDALEVTDASLANQI-VYLAVPLRSE-SLMEINWPEE 118
            ++R   V PDG+ +  PQ D LP A ++ +     +I VY A+ L     L  +   +E
Sbjct: 61  QLKRLKLVFPDGSLYDAPQHDPLPAARDLKNLLKGGEIKVYAALKLPEPFGLNYVEDGQE 120

Query: 119 RGTGRYVSRRLE-VRDVHSVQGDTTTIDVSPVRLQ--LMLEREDRSAYASIAIGRILEKR 175
           + + R   ++ + + D++  +GD    +++ +RL   ++++ +    Y+   I R L + 
Sbjct: 121 QKSARRFRKQFDTLPDLN--EGDLEN-EITSLRLNVVMLVDGDSLDGYSYCPIAR-LARN 176

Query: 176 PDGSVVLDPDF------IPCHLNVVG-----ISALHRFINEMSGLMRERAKNIAQRISSP 224
             G   LD  F      +  H  +VG     IS L      +SG  RERA  I       
Sbjct: 177 SIGGFNLDAHFVHPTLHVGTHETLVGLGRRLISVLQAKSKALSGRRRERADQI------- 229

Query: 225 AQGGVADVSDFMLLQALNRLQPQMKHLAELRSLHPERLFECLSCVCGELATFTDESRLPP 284
           A+ G +DV+ F LL  +NR  PQ+ HL     LHPERL+  L+ + G L TF+ +++L  
Sbjct: 230 AEFGSSDVTLFWLLNTVNRAYPQLAHLLAHPRLHPERLYLFLAELAGGLLTFSLDTQL-T 288

Query: 285 SLPSYNHDSPSHSFQPLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAE 344
            +P Y+H  P+ S   L   +R  L  V+  + + I L + +       + DP+L E A+
Sbjct: 289 DIPDYDHQDPAASLVKLDELVRLLLENVIPNQCIVINLSQVRPSYWQGQLLDPRLTE-AD 347

Query: 345 FIIAVKARMPLDELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYT 404
           F I+V A MP   L  L  +  KV S E I  +++  +PG+ L      P  +P      
Sbjct: 348 FYISVHADMPGSSLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHSTRLPNAIPVRLDNH 407

Query: 405 YYQLDKTSAAWAMLTHSSGFAFHVAAAFDDLELQFWAI 442
           Y+ ++     +  +  +   +F+  +AF +L+L+  A+
Sbjct: 408 YFSIEPHGRVYERMMEAQAISFYAPSAFTNLKLELLAV 445