Pairwise Alignments

Query, 338 a.a., type VI secretion system baseplate subunit TssG from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., type VI secretion protein, VC_A0111 family from Pseudomonas stutzeri RCH2

 Score =  219 bits (558), Expect = 8e-62
 Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 5/325 (1%)

Query: 10  VDLNSDPAQASPLSLPGNVREYNFYQLVEL-LQKLADINPESEEWERDCRLVFSANPSLG 68
           +D     A A+   L   +REY+ +Q V L L +L  +NP  ++     RL F ANPSLG
Sbjct: 1   MDAAHGSATAALKPLNRGIREYSLFQGVLLVLDRLRQLNPGLDDEALYERLEFQANPSLG 60

Query: 69  FSPSD---VMALEARDDERWVMLTNFFGLSGAQSPLPGFILEQLVTE-EPGGYKQPFLDF 124
           F  SD   V  L+   + R  +  N   L GA SPLP F  EQ + + E G   + FLD 
Sbjct: 61  FPGSDIEQVQFLQEHGEWRARLRINLVSLFGAGSPLPAFYGEQALGDSEDGNPTRDFLDL 120

Query: 125 FNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYA 184
           FNNRL  L+  +W+KYRY  RF  GA D FS QLFALVGL    +R    +NW ++L Y 
Sbjct: 121 FNNRLQRLLLPIWQKYRYRARFTSGAHDPFSEQLFALVGLSGEAIRNAPELNWKRLLPYL 180

Query: 185 GTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIG 244
           G L+ R+ S  ++  ++ + F   +++I Q + R+V I   Q+  LG+ N++LG   V+G
Sbjct: 181 GLLSLRAHSAALIESVLRYYFKHAELNIEQCLERQVEILGEQRNRLGQANSQLGESLVLG 240

Query: 245 ESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREA 304
           E V D  GKF I I++L  +RF +FLP G  YQPLC LV F LR+ + YDL L +   E 
Sbjct: 241 ERVRDRGGKFRIHIRQLDWNRFHEFLPIGSGYQPLCALVRFTLRDPLDYDLRLELRPDEI 300

Query: 305 PLFCLDTRQNIALGWTSFLGQDAAN 329
               +    N  LGWTS+LG++ A+
Sbjct: 301 RELRIGADNNCRLGWTSWLGRERAD 325