Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., type VI secretion protein, VC_A0110 family from Pseudomonas stutzeri RCH2

 Score =  437 bits (1124), Expect = e-127
 Identities = 247/609 (40%), Positives = 353/609 (57%), Gaps = 33/609 (5%)

Query: 1   MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVE 60
           M+ + Y++ EL  L++ GK F E  P L+ FL     DPDVERLLEGFAFLT RLR+K++
Sbjct: 1   MSFNHYYQSELTALRQLGKRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLD 60

Query: 61  DEFPELTHSIINMLWPNYLRPIPSMSVVAFEPDKSVSEKQVIPRNTQLDSKPVFGTACHF 120
           DE PELTHS++++LWPNY+RP+P+ S++ F+  K       +PRNT ++S PV G +C F
Sbjct: 61  DELPELTHSLMHLLWPNYMRPLPAFSMLQFDTLKRPGPALTVPRNTPVESNPVQGVSCCF 120

Query: 121 NTCRDVALYPMQCQGVHAEHTREATTIQISLRMLGDMTVGDAKLDTVRFYLGGDKYSSQT 180
            T     + P+  Q +          + + L+M  D  +G+  L  +R +L G+ Y SQ 
Sbjct: 121 RTAYATEVLPLALQALEYSVKGTGALLSLRLQMSADGHLGEIGLSHLRLHLAGEPYISQL 180

Query: 181 LYLWLHHYL---QKMTIEVQG-----------VEFALPADAFSTVGFSSDQALLPYPKNV 226
           LYL L  +L   + + +  QG               L A     VGF+ D+AL+PYP N 
Sbjct: 181 LYLSLLRHLGGIELVPLNEQGKPLTGSDGRPLTPLQLNAKQVEPVGFAEDEALIPYPLNT 240

Query: 227 YDGYRILQEYLSFPEAFHFFDVKGFA------KALPKAVSGDFTLRIHFSKTLPADTRVR 280
           + GYR LQEY +FP+ F F D+KG        + L K   G   LR    K      R  
Sbjct: 241 FRGYRYLQEYFAFPDKFLFVDLKGLEVIQRIPEDLLKQARG-LELRFDIHKAGVQRIRPT 299

Query: 281 QDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSE 340
            DN +LYCTPV+NLF HDA PI L G++ +Y ++P+        +FSVD+V GW+     
Sbjct: 300 LDNVRLYCTPVVNLFPHDAIPIRLDGKQDQYLLLPAEYDTQQCGVFSVDRVTGWKPGGMG 359

Query: 341 GKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSM 400
            +        Y  FESF+H+          +Y  R + S+ G+G ++++SF       ++
Sbjct: 360 YEE-------YVPFESFEHDASFDVPVARPHYSVRQQPSLLGEGQETWLSF----GLRNL 408

Query: 401 GVDEAVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWT 460
              E +SI+LTCTN+ LP +L +GDIC  ++ +P F +F+NI+  + S  P L    LW 
Sbjct: 409 DQHETLSIELTCTNQNLPRQLKLGDICKPSEDTPEFLSFRNISAVTPSYAPPLQRDYLWK 468

Query: 461 LISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRG 520
           LISN+SLNYLSL + +AL  +L  YD     D+ AE V+R RL G+  I  + VD++ RG
Sbjct: 469 LISNMSLNYLSLANVEALKVILETYDLPRYYDKHAENVSRRRLGGLTHIAHQHVDRLHRG 528

Query: 521 LPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWG 580
           LPVRG+++ L ++Q GF  EGDLFLF +VL+ FFALYAS+NS+HEL V + +  E Y W 
Sbjct: 529 LPVRGVRTELTMNQDGFIGEGDLFLFASVLNEFFALYASLNSYHELRVQS-TQGEVYQWT 587

Query: 581 TQSGMQPLI 589
            + G QPL+
Sbjct: 588 PRMGQQPLL 596