Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., type VI secretion protein from Burkholderia phytofirmans PsJN

 Score =  193 bits (490), Expect = 2e-53
 Identities = 181/641 (28%), Positives = 275/641 (42%), Gaps = 87/641 (13%)

Query: 6   YFREELAFLKEQGKEFTEIHPQLSRFLH---GRTTDPDVERLLEGFAFLTARLREKVEDE 62
           Y+  EL +++E   EF   HP+++R L    G   DP VERLL+  AF+TAR + +++D 
Sbjct: 8   YYSRELLYIRELAMEFAAAHPKIARRLGMHAGEIGDPYVERLLQSSAFVTARAQIRLDDA 67

Query: 63  FPELTHSIINMLWPNYLRPIPSMSVVAFEP---DKSVSEKQVIPRNTQLDSKPVFG--TA 117
           FPE T  ++  ++PNY  P PS++V  F P    K      V+PR T   S+   G  TA
Sbjct: 68  FPEFTLPLLQTVYPNYTCPTPSIAVARFFPLAQGKHAVNGTVVPRGTAFPSRIPDGELTA 127

Query: 118 CHFNTCRDVALYPMQC----------------QGVHAEHTREATTIQISLRMLGDMTVGD 161
           C F + +DV L+P++                 + V A  T     +++ LR     ++ +
Sbjct: 128 CEFRSSQDVTLFPLEIVQARLTGIPPDIPMLDRYVPAGRTAHG-ALRLRLRTTNGASIAN 186

Query: 162 -AKLDTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEF------ALPADAFSTVGFS 214
            A LD +  YL GD+ ++  L+  +H       I V G EF      A+  DA       
Sbjct: 187 LAGLDRLPVYLSGDETTASHLFELIHAAGVVTVIGVPG-EFATGTLHAVTRDAVVHEALE 245

Query: 215 SDQALLPYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLP 274
            +Q+LLP     + G+ +LQEY + P  F FF + G AK L      +  + +   + + 
Sbjct: 246 PEQSLLPAVPRKFHGHNLLQEYFACPARFWFFTLTGLAKGLASIAGNEAEIVLLLERPVD 305

Query: 275 --ADTRVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVV 332
             A+T V   +F L+CTPVINLF    D +DL   R  +R+VP     + Y + SV    
Sbjct: 306 RLAET-VDASHFALFCTPVINLFPRRTDRLDLDPDRQSHRLVPVPAASSDYAVHSVQAAW 364

Query: 333 GWQDTQSEGKRIRGEKRIYSSFESFQHEVERVRHRQALYYR-----TRVKESIRGDG--- 384
           G     SE  R          F      V     R A Y+       R +E  R  G   
Sbjct: 365 GQVSEDSEALR----------FYPLHASVGESTSRGARYFTIRREPNRAEEDGRHYGTRR 414

Query: 385 ----FDSFISFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGV-GDICVATDSSPPFATF 439
                 +FIS V  DE  +      +S++   TNR LP  +   G   +    S P  + 
Sbjct: 415 PFTETRTFISLVDRDEQPNTERIHYLSLEALLTNRDLPCLIPCDGRRDLFPHKSIPAESV 474

Query: 440 KNITVPSQSLRPVLDGSLLWTLISNLSLNYLSL-------LSKDALSCVLRAY--DFRAL 490
             +  P+    P+  G   W L   L+L Y++         + DAL  +LR Y  +  A+
Sbjct: 475 GLVRAPTMPRPPLASGERAWQLYGQLNLGYMTFDEPPDRPATGDALRRLLRLYLSEDAAV 534

Query: 491 VDRQAERVARMRLDGIVKIESKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDL 543
           + RQ E            + S     + R LP        RG++ TL  D++GF      
Sbjct: 535 LRRQVE-----------ALRSATATPVNRRLPPHFPQPFGRGIECTLTFDESGFDGMSP- 582

Query: 544 FLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGTQSG 584
           +  G VL  + A + S  SF   V+ +        W  ++G
Sbjct: 583 YTLGLVLERYVARHVSERSFTTTVLCSTQRGRLTHWPPRAG 623