Pairwise Alignments

Query, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., Uncharacterized protein ImpC from Pseudomonas fluorescens FW300-N2E2

 Score =  386 bits (992), Expect = e-112
 Identities = 197/474 (41%), Positives = 292/474 (61%), Gaps = 6/474 (1%)

Query: 18  SLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKIS 77
           SLLD+I+A+ R+A  +   D A+  +A F   ++    + +    ++++  + ++D+ IS
Sbjct: 18  SLLDKIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDQLIS 77

Query: 78  AQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQS 137
           AQ++E+LH+   Q +E++WRGL L V  T+     K+ +L+VT+ EL  D E A E  QS
Sbjct: 78  AQLNEVLHHPDLQKLEASWRGLHLLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQS 137

Query: 138 GLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEF 197
            L+K +Y   YG FGG P   ++G+Y F     D+ LL+ +  + A AHAPFI++  P  
Sbjct: 138 ALFKKIYEEEYGTFGGHPFSLLVGDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRL 197

Query: 198 FGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIENPVK 257
           F + SF EL   +DL   FES +  KWR+ RESED+RY+ L  P FLLR+PY P   PV+
Sbjct: 198 FDMTSFTELAIPRDLSKIFESQELIKWRAFRESEDSRYVSLVLPHFLLRLPYGPDTLPVE 257

Query: 258 SFNYAENVSAS-HEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFE 316
             NY E+V+ + H  YLWGN A+  A R+T++FAKY WC  I G + GGAVE LP H F 
Sbjct: 258 GINYVEDVNGTDHSKYLWGNAAWTLAQRITEAFAKYGWCAAIRGAEGGGAVEGLPAHTFR 317

Query: 317 -SMGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKE 375
            S G L  K PTEV ITDR+E EL + GFI+L  +K SD A FF   +  K KV+ NT  
Sbjct: 318 TSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKAKVY-NT-- 374

Query: 376 GKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYVADQE 435
             EA  N ++   LPY++  +R AHY+KV+ R+++G++  R +++  LN+WI  YV   +
Sbjct: 375 -NEANANARISAMLPYVLAASRFAHYLKVIMRDKVGSFMTRDNVQTYLNNWIADYVLIND 433

Query: 436 NPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRL 489
           N P +++++ PLR AR++V +V G PG Y+ ++ +RPHF+       + LV  L
Sbjct: 434 NAPQEIKAQYPLREARVDVTEVAGKPGAYKATVFLRPHFQLEELTASIRLVATL 487