Pairwise Alignments

Query, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Uncharacterized protein ImpC from Pseudomonas fluorescens FW300-N2E2

 Score =  354 bits (909), Expect = e-102
 Identities = 177/433 (40%), Positives = 268/433 (61%), Gaps = 9/433 (2%)

Query: 65  VDQMLVELDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDEL 124
           ++ ++  +D K++AQ+++++H+  FQ +ESAWRGL   V+ T+  E  K+ +L+++K +L
Sbjct: 69  IESIIAAIDAKLTAQVNQVIHHPDFQQLESAWRGLHYLVNNTETDEQLKIRVLNISKTDL 128

Query: 125 LEDFEFAPETA--QSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALG 182
            +  +    TA  QS ++K +Y   YGQFGGEP G ++G+Y F  S PD++LL  +  + 
Sbjct: 129 HKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVC 188

Query: 183 AMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPR 242
           A  H+PFI++  P   G+ S++EL N +DL   F +P+Y  WRSLRESED+RY+GLT PR
Sbjct: 189 AAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPR 248

Query: 243 FLLRVPYDPIENPVKSFNYAENV-SASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGP 301
           FL R+PY    +PV++F + EN   A    Y W N A+A A  +  SF  + WC  I G 
Sbjct: 249 FLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCSRIRGV 308

Query: 302 QSGGAVEDLPVHVFES-MGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFS 360
           +SGG VE+LP H F +  G +  K PTE+ I+DR+E ELA+ GF+ L  +K +D AAF  
Sbjct: 309 ESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIG 368

Query: 361 ANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLE 420
           A S+QKP  +    +  +A  N  L  +LPY+    R AHY+K + R++IG++KE+ +++
Sbjct: 369 AQSLQKPAEY----DDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEKDEMQ 424

Query: 421 RELNSWIKQYV-ADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGA 479
           R L  WI  YV  D  +     +++ PL AA + V +VEGNPG+Y     +RPH++  G 
Sbjct: 425 RWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLEGL 484

Query: 480 NFELSLVGRLDQA 492
              L LV +L  A
Sbjct: 485 TVSLRLVSKLPSA 497