Pairwise Alignments

Query, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., type VI secretion protein from Pseudomonas fluorescens FW300-N2C3

 Score =  155 bits (392), Expect = 3e-43
 Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 1   MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQTPLEERATVTVDKN 60
           M+KEGSVAPKERIN+ + PATG A+ ++ELPLK L +GD+    ++  +E+R  + +DK 
Sbjct: 1   MAKEGSVAPKERINVTFKPATGGAREDIELPLKLLALGDYTHRKDERKVEDRKPIGIDKM 60

Query: 61  NFEAVMRESELKITATVKNKL-TDDENAELPVELNFKSLADFAPDAVASQVPELKKLIEL 119
            F+ V+ +  L +T +V N+L   D   EL V+L   S+ DF P ++  QVPEL KL+ L
Sbjct: 61  TFDEVLAKQALSLTLSVPNRLQAQDGTEELAVQLRLNSMKDFNPASLVEQVPELSKLMAL 120

Query: 120 REALVALKGPLGNIPAFRERLQSLLNSEESREKLLAELNL 159
           R+ALVALKGPLGN PAFR+ ++ +L +++SR ++L EL L
Sbjct: 121 RDALVALKGPLGNAPAFRKAIEGVLANDDSRRRVLDELGL 160