Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas fluorescens FW300-N2C3

 Score =  102 bits (254), Expect = 2e-26
 Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 26/225 (11%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGV-HVHDSVLTRLKAQFTQAEGV---FALHRL 406
           AQ   + IVY+DD I+V+NKPA  +  P   H   ++L  L         V     +HRL
Sbjct: 78  AQDIALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRL 137

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           D  T+GL+V A T +A  QL  Q  SR+V + Y  ++ G ++   G+I  P+      R 
Sbjct: 138 DKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVT-AGGKINAPIGRHGQQRQ 196

Query: 467 RQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
           R  V  + GK A++H+  ++  ++ T V +   TGRTHQ+RVH AH   +N P+VGD  Y
Sbjct: 197 RMAVM-EGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAH---INFPLVGDPAY 252

Query: 527 GLQDK-----------------RLFLHAEQLSFAHPYTKQPMTFQ 554
           G + +                 R  LHA  L   HP T + M+++
Sbjct: 253 GGRFRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWE 297