Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  103 bits (258), Expect = 9e-27
 Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 30/227 (13%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVF------ALH 404
           AQ   + IVY+DD I+V++KPA  +  P     D  L  L A      G+        +H
Sbjct: 133 AQDIPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTL--LNALLHHVPGLINVPRAGIVH 190

Query: 405 RLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDD 464
           RLD  T+GL+V A T +A  +L +Q  +R+V + Y A++ G +  T G I  P+      
Sbjct: 191 RLDKDTTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVII-TGGTIDAPIGRHGQQ 249

Query: 465 RPRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDD 524
           R R  V  + GKPA++H+  ++  ++ T V +   TGRTHQ+RVH  H   L  P+VGD 
Sbjct: 250 RQRMAVV-EGGKPAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMPH---LGYPLVGDP 305

Query: 525 LYG-------------LQDKRLF----LHAEQLSFAHPYTKQPMTFQ 554
           LY              +Q  R F    LHA  L   HP T Q M ++
Sbjct: 306 LYAGRFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWE 352