Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score =  101 bits (252), Expect = 4e-26
 Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 30/225 (13%)

Query: 351 AQGQDI--TIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRL----KAQFTQAEGVFALH 404
           A  QDI   ++Y+DD ++V++KPA  +  PG    D  L                   +H
Sbjct: 83  AAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVH 142

Query: 405 RLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDD 464
           RLD  TSG++V A T +A   L +Q  +R V ++Y+A++ G L  + G    P+  D   
Sbjct: 143 RLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGAL-VSGGTADAPI--DRHP 199

Query: 465 RPRQKVCWQ-QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGD 523
           R R K+  +  G+ A+TH+   +  +  T +     TGRTHQ+RVH AH   L +PIVGD
Sbjct: 200 RDRLKMAVRDDGRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAH---LKSPIVGD 256

Query: 524 DLYG-----------------LQDKRLFLHAEQLSFAHPYTKQPM 551
            LYG                    KR  LHAE L F HP + +P+
Sbjct: 257 PLYGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPI 301