Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  269 bits (688), Expect = 2e-76
 Identities = 181/506 (35%), Positives = 259/506 (51%), Gaps = 36/506 (7%)

Query: 64  PQAHGKMFGVLVVQHRSGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDGDQI 123
           P   GKMFG+L+  +  G    L AFSG L  +   PG+VPP+  R       R+  +  
Sbjct: 64  PLLEGKMFGLLIAANDQGDRFVLQAFSGSLQGKAEWPGWVPPIPGRERT----RLQEELT 119

Query: 124 AAINQQVREQETDPELAELASALKQSQLQAEHELSQRRILHNKQRHFRKQQRLQAEELPE 183
               Q++R    D +   + + LK ++   ++ L Q +    ++R  R+Q R QA  + +
Sbjct: 120 LLELQEIRTALQDNQQHPIRAELKTAEQVWQNRLDQLKAEQQQRRLQRQQDREQA--IAQ 177

Query: 184 KEKHTLLARL-------AEESVQQKRQLQCLKQEWEQRIAALQHRLDHKLMRIEQLKQQR 236
                L  RL       A++   + R    LKQ   Q +AALQ ++        +L+++R
Sbjct: 178 LTGEALAHRLWEIEQAGADDGFARSR----LKQARRQELAALQAQVAELEAEWLRLRRRR 233

Query: 237 KQRSAALQKKLFSAYRFTNIRGVEKDLVELFSVTKNPLPPAGSGECAAPKLLHYAFQHQL 296
           +  S ALQ  +  +    +  GVE+ +  L  +      P G+G+C  PKLLH+A    L
Sbjct: 234 RAISQALQTAMHQSATLRSFDGVEQAIASLGRL------PTGTGDCCLPKLLHWAGVAGL 287

Query: 297 RPIALAEFWWGRSPKSEIRQHKKFYPACQSKCQPILAHMLEGMP-LEDNPLLSNPAQGQD 355
            P+++AEFWWG  P    RQ  +FY  C+ +CQPIL H+L G+P   D PL        +
Sbjct: 288 TPLSIAEFWWG--PPLSDRQAGQFYGPCRDRCQPILGHLLAGLPPSSDEPL--------E 337

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVH--VHDSVLTRLKAQFTQAEGVFALHRLDMSTSGL 413
           + I+Y+D  ++ + KPA  LSVPG       S +  L+ QF        +HRLD +TSG+
Sbjct: 338 LPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCVVHRLDQATSGI 397

Query: 414 LVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQ 473
           L+ A  R     L +QF  R V K Y AL+EG+   T G I LPL  D   RP Q V   
Sbjct: 398 LLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTIDLPLRPDWTRRPYQLVDRD 457

Query: 474 QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRL 533
           +G+PALT++  +    +R R+ L P TGRTHQLRVH AH  GL  PI+GDDLYG    RL
Sbjct: 458 RGRPALTYYRCIDQTGDRCRMELEPITGRTHQLRVHMAHPEGLGQPILGDDLYGQSSDRL 517

Query: 534 FLHAEQLSFAHPYTKQPMTFQVDADF 559
           +LHA  + F HP     +    D  F
Sbjct: 518 YLHARSIRFRHPSQLDWIQLTTDTPF 543