Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  100 bits (250), Expect = 6e-26
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 30/226 (13%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRL------KAQFTQAEGVFALH 404
           AQ  D+ IVY+DD I+V+NK A  +  PG    D  L         + +     G+  +H
Sbjct: 79  AQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHHCPEIEHVPRAGI--IH 136

Query: 405 RLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDD 464
           RLD  T+GL+V A T  A   L     +R + + Y A++ G ++   G +  P+      
Sbjct: 137 RLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMT-AGGTVDAPIGRHPTK 195

Query: 465 RPRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDD 524
           R    V    G+P++TH+   +  +  TR+ L   TGRTHQ+RVH AH   +   +VGD 
Sbjct: 196 RTHMAV-HHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMAH---IGHVLVGDP 251

Query: 525 LYGLQDK-----------------RLFLHAEQLSFAHPYTKQPMTF 553
           +YG + K                 R  LHA +L  AHP T + M+F
Sbjct: 252 VYGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSF 297