Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (270), Expect = 3e-28
 Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 15/223 (6%)

Query: 347 LSNPAQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRL 406
           L+  AQ +D  I+++D  I+V+NKPA      G  V   V+  L++     + +  +HRL
Sbjct: 98  LNRVAQLED-RILFEDKQIIVLNKPAGIAVHGGSGVDYGVIESLRSLRPTCKFLELVHRL 156

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCG-DLDDR 465
           D  TSG+L+ A  R A + L  Q  ++ +QK Y AL+ G+  E    ++ PL    L   
Sbjct: 157 DRDTSGVLLIAKKRMALRHLHDQLRNKQMQKVYQALVRGQWQEHDRVVKAPLLKITLKSG 216

Query: 466 PRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
            R      +GKP+ T +  ++     + V   P TGRTHQ+RVHC +      PI  DD 
Sbjct: 217 ERIVRVNSEGKPSETRFRVLRRFDEASLVEASPVTGRTHQIRVHCQYQ---GHPIACDDK 273

Query: 526 YGLQD----------KRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
           Y  Q           +RLFLHA QL+F HP ++  MT Q   D
Sbjct: 274 YSEQKFDDAMRAKGLQRLFLHAAQLTFTHPESETQMTVQAPLD 316