Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  157 bits (398), Expect = 3e-43
 Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 18/220 (8%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG---VHVHDSVLTRLKAQFTQAEGVFALHR 405
           NP     + I++QD  I+V+NKP+  LSVPG   +H HDS  +R+KA+   ++ V   HR
Sbjct: 8   NPPTDPWLDILHQDKDIIVINKPSGLLSVPGRDPIH-HDSAWSRIKAEHPNSQVV---HR 63

Query: 406 LDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDR 465
           LDM+TSG++V+AL + A  +L++QF  R   K Y A + G + +    + LPL  D  +R
Sbjct: 64  LDMATSGVMVYALRKSAEVELKRQFRDRETHKTYFARVAGHV-KANCSVDLPLICDWPNR 122

Query: 466 PRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           PRQKV  + GKP+LTH + +   +  T V L P TGR+HQLRVH    + L  PI+GD  
Sbjct: 123 PRQKVDHEIGKPSLTHVDVISYGKRSTLVKLTPITGRSHQLRVHM---MALGHPILGDGF 179

Query: 526 Y------GLQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y       L D RL LHA  LSF HPY+ + MTF  +  F
Sbjct: 180 YADPLAKSLAD-RLLLHAASLSFTHPYSGEAMTFSTEVPF 218