Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 29/238 (12%)

Query: 342 EDNPLLSNPA-QGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTR--LKAQFTQAE 398
           E  P+ + P  +   +T+VY+DD ++V++K A  +  PG    D  L    L        
Sbjct: 87  EPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLS 146

Query: 399 GVFA------LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQG 452
           G+        +HRLD  TSGL++ A T  A+  L +QF   ++ + Y+ L+ G+     G
Sbjct: 147 GIGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAAG 206

Query: 453 EIQLPLCGDLDDRPRQKVCWQQGKPALTHWETV-QVEQNRTRVYLYPHTGRTHQLRVHCA 511
            I  PL      R +  V  + GK ALTH+  V  VE   + V     TGRTHQ+RVH A
Sbjct: 207 SIDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHMA 266

Query: 512 HHLGLNAPIVGDDLYGLQD----------------KRLFLHAEQLSFAHPYTKQPMTF 553
           H   +  P++GD +YG ++                 R  LH+  L F HP T + + F
Sbjct: 267 H---IGHPLLGDAVYGHRNIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGESLEF 321