Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., RluA family pseudouridine synthase from Parabacteroides merdae CL09T00C40

 Score =  456 bits (1174), Expect = e-133
 Identities = 245/549 (44%), Positives = 342/549 (62%), Gaps = 15/549 (2%)

Query: 11  FTSVIAHIALPERFTFPFCYQPHPLSEIAADELQQHLLTQTDWYHPFGLTETDPQAHGKM 70
           F   I+ ++LPE+FT+PF Y PHPL   AA E+ ++L T+ +W              GKM
Sbjct: 7   FADSISLLSLPEKFTYPFHYTPHPLCVAAAGEVGRYLSTKGEWQGEL--------RKGKM 58

Query: 71  FGVLVVQHRSGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDGDQIAAINQQV 130
           FGVL+V+   G +GYLAAFSG LA +NR   FVPPV+D      FFR++ +QI+ IN+++
Sbjct: 59  FGVLIVRTGEGEVGYLAAFSGILAGKNRHTYFVPPVYDVQEPDGFFRIEEEQISGINRRI 118

Query: 131 REQETDPELAELASALKQSQLQAEHELSQRRILHNKQRHFRKQQRLQAEELPEKEKHTLL 190
            E + D    +    L    + A   L   R          K  +++ + L         
Sbjct: 119 EELQADVRYKDCKQRLADETILAGQVLDDIR-------GRMKAAKVERDRLRSTVTRVDS 171

Query: 191 ARLAEESVQQKRQLQCLKQEWEQRIAALQHRLDHKLMRIEQLKQQRKQRSAALQKKLFSA 250
            +L  ES  QK +L+  KQ W+  +A+LQ  ++     IE+LK +RK RSAALQ+ LF  
Sbjct: 172 EQLIRESQFQKAELKRQKQYWKDHLASLQAEVEVFETEIERLKAERKTRSAALQQWLFKQ 231

Query: 251 YRFTNIRGVEKDLVELFSVTKNPLPPAGSGECAAPKLLHYAFQHQLRPIALAEFWWGRSP 310
           +R  N RG E+DL  LF  T    PPAG+GECAAPKLL YA+++  +P+A+AEFWWG SP
Sbjct: 232 FRMLNARGEERDLCNLFKDTVQKTPPAGAGECAAPKLLQYAYRNGWQPLAMAEFWWGDSP 291

Query: 311 KSEIRQHKKFYPACQSKCQPILAHMLEGMPLEDNPLLSNPAQGQDITIVYQDDAIVVVNK 370
           K+EIR+H  +YPAC+ KC PIL HML+G+ +E+NPL ++  +  ++ I+Y+D+ + VVNK
Sbjct: 292 KNEIRRHGYYYPACKGKCGPILKHMLQGLHVEENPLETDMHRDTELEIMYEDEWLSVVNK 351

Query: 371 PAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFALTRRANKQLQKQF 430
           PA  LSVPG    DSV  R++  + +A G   +HRLDM+TSGL++ A T+  ++ LQ QF
Sbjct: 352 PAGMLSVPGKSDIDSVYGRVRRMYPEATGPMIVHRLDMATSGLILIAKTKEVHQNLQAQF 411

Query: 431 ISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQQGKPALTHWETVQVEQN 490
            +R V KRYVA ++G + + +G I+LPL  D +DRPRQ V    GKPA+T +  +  +  
Sbjct: 412 KNRTVCKRYVAWLDGIVEKKEGHIELPLRPDPEDRPRQVVDAVHGKPAVTDYTVLHYDSG 471

Query: 491 RTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLFLHAEQLSFAHPYTKQP 550
           RT +   P TGRTHQLRVH AH LGLNAPIVGD+LYG +  RL+LHAE L F HP +   
Sbjct: 472 RTFISFIPKTGRTHQLRVHSAHPLGLNAPIVGDELYGRKADRLYLHAEYLGFIHPVSGVY 531

Query: 551 MTFQVDADF 559
           M  + ++ F
Sbjct: 532 MEIEKESGF 540