Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  101 bits (252), Expect = 3e-26
 Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 40/233 (17%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEG-------VFALHRLDM 408
           I I+Y+DD +V ++KPA      G+ VH S L R +  F            VF +HRLD 
Sbjct: 23  IEILYEDDDLVAIHKPA------GLLVHRSYLARREKYFAMQMTRDLVGCHVFPVHRLDR 76

Query: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQ 468
            TSG+L+FA +     QL +QF S++VQK YVAL+ G + E  G +  PL  +LD+   +
Sbjct: 77  PTSGVLLFAKSSEMANQLCEQFASKSVQKHYVALVRGNMHE-PGLLDYPLKQELDELGDK 135

Query: 469 KVCWQQ-GKPALTHWETV-----------QVEQNRTRVYLYPHTGRTHQLRVHCAHHLGL 516
            V   +  + A T +  +                   V L PHTGR HQLR H AH   L
Sbjct: 136 NVDPNKAAQEAQTSYHPLLNCEIPYPSGRYASSRYALVQLTPHTGRKHQLRRHMAH---L 192

Query: 517 NAPIVGDDLY--GLQDK---------RLFLHAEQLSFAHPYTKQPMTFQVDAD 558
             PI+GD  +  G Q++         RL+L A++L F HP + + +  + + +
Sbjct: 193 RHPIIGDTTHGDGKQNRFMREHSGINRLWLIAKKLEFNHPRSGERIAVETELE 245