Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  577 bits (1488), Expect = e-169
 Identities = 305/567 (53%), Positives = 382/567 (67%), Gaps = 11/567 (1%)

Query: 1   MSALPDCFTRFTSVIAHIALPERFTFPFCYQPHPLSEIAADELQQHLLTQTDWYHPFGLT 60
           M     CFT F++ I  IALPERFTFPF Y+PH L E+AA ELQ HL  Q  W H FGLT
Sbjct: 15  MYCAQQCFTPFSTSIEGIALPERFTFPFYYEPHRLCELAASELQAHLEQQQTWQHNFGLT 74

Query: 61  ETDPQAHGKMFGVLVVQHRSGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDG 120
                A GKMFGVLVVQ   G LGYL AFSG+LAEQN LPGFVPPVFD     SFF   G
Sbjct: 75  GPREGAIGKMFGVLVVQKADGELGYLKAFSGKLAEQNLLPGFVPPVFDMLTQDSFFH--G 132

Query: 121 DQIAAINQQVREQET---DPELAELASALKQSQLQAEHELSQRRILHNKQRHFRKQQRLQ 177
           +Q+A INQ   E E+    PELA L+  L          +++ R    + R  RK +R+ 
Sbjct: 133 EQLA-INQLTAELESLQQAPELASLSDELNTLNAGKAAAVAELRAEIIENRKARKARRVA 191

Query: 178 AEELPEKEKHTLLARLAEESVQQKRQLQCLKQEWEQRIAALQHRLDHKLMRIEQLKQQRK 237
            E L  +    L  +L  ESV +K +L+ L ++W+ +IA  +HRL      IE LKQQR 
Sbjct: 192 GERLDAQAFEDLQQQLGRESVAEKHRLRLLNEQWDSQIAEREHRLSALQDEIEVLKQQRA 251

Query: 238 QRSAALQKKLFSAYRFTNIRGVEKDLVELFSVTKNPL-----PPAGSGECAAPKLLHYAF 292
            +S ALQ+KLF+ Y F N  G  KDL  LFS++   L     PPAG+GECAAPKLL +AF
Sbjct: 252 SQSNALQRKLFAQYCFLNQAGEVKDLNTLFSLSTKSLSPKGLPPAGAGECAAPKLLQFAF 311

Query: 293 QHQLRPIALAEFWWGRSPKSEIRQHKKFYPACQSKCQPILAHMLEGMPLEDNPLLSNPAQ 352
            + L+P+A+AEFWWG SPKSE++QHK+FY AC  KC+PILAHML G+ L+DNPLL+NPA+
Sbjct: 312 ANGLKPVAMAEFWWGASPKSEVKQHKQFYGACHGKCEPILAHMLSGIALDDNPLLNNPAE 371

Query: 353 GQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSG 412
           G+D++I+YQD+AI VVNKPAEFLSVPG HV DSV +R++  F +A G   +HRLDMSTSG
Sbjct: 372 GKDLSIIYQDEAIAVVNKPAEFLSVPGKHVTDSVYSRMRQAFPKATGPLIVHRLDMSTSG 431

Query: 413 LLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCW 472
           L+V AL+  AN  L +QFI R V+KRY+A + G++   +GEI LPL  DLDDRPRQ VC+
Sbjct: 432 LMVIALSSEANTALVQQFIGRTVEKRYLARVAGEVQGEEGEITLPLRVDLDDRPRQLVCF 491

Query: 473 QQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKR 532
           + GK A T+W      +  T + L+P TGRTHQLRVHCAH  GL  PI+GDDLYG +  R
Sbjct: 492 EHGKHAHTYWLVKSRGEGTTLLSLFPKTGRTHQLRVHCAHQDGLGMPIIGDDLYGAKANR 551

Query: 533 LFLHAEQLSFAHPYTKQPMTFQVDADF 559
           L LHA+ L+F HP + + ++F  D DF
Sbjct: 552 LHLHAQYLAFNHPISGERVSFSCDPDF 578