Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (286), Expect = 4e-30
 Identities = 77/212 (36%), Positives = 108/212 (50%), Gaps = 14/212 (6%)

Query: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFA 417
           I+++D AI+V+NKPA      G  V   V+  +++   Q + +  +HRLD  TSG+L+ A
Sbjct: 108 ILFEDKAIIVLNKPAGIAVHGGSGVDFGVIEAMRSLRPQQKFLELVHRLDKETSGVLLIA 167

Query: 418 LTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCG-DLDDRPRQKVCWQQGK 476
             RRA K L  Q   + +QK Y+AL+ G+       I  PL    L    R     Q+GK
Sbjct: 168 KKRRALKHLHDQLRYKKMQKDYMALVRGEWQNHDKVINAPLLKLTLKSGERIVRVNQEGK 227

Query: 477 PALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD------ 530
           P+ T ++ +Q  Q  T V   P TGRTHQ+RVHC +      PI  D+ Y  Q       
Sbjct: 228 PSETRFKIMQRYQGATLVQASPVTGRTHQIRVHCQY---AGHPIACDEKYSEQKFDDAMR 284

Query: 531 ----KRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
                RLFLHA QL F HP +++ M  +   D
Sbjct: 285 ELGLNRLFLHAAQLKFTHPVSEEVMQVKAPLD 316