Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  151 bits (381), Expect = 3e-41
 Identities = 86/205 (41%), Positives = 122/205 (59%), Gaps = 14/205 (6%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGL 413
           + I YQD  I+++NKP+  LS PG     HD  + RL  +F +A     +HRLD +TSG+
Sbjct: 14  LDIRYQDRDIIIINKPSGLLSNPGRAAETHDCAINRLLQRFPEA---ILVHRLDCATSGI 70

Query: 414 LVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQ 473
           +VFAL ++A   L+ QF +R  +K YVA +EG +++  G+I+L +  D +  P QK+  +
Sbjct: 71  MVFALNKKAESHLKTQFQNRTTEKYYVAEVEGLMAQDSGKIELAMKPDSEQPPLQKIA-E 129

Query: 474 QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG-----L 528
            GKPA T++E ++   N T V L P TGRTHQLR+H      L   I+GDD YG      
Sbjct: 130 DGKPATTYFEVLERRSNSTLVKLKPITGRTHQLRLHMK---ALGHTILGDDFYGDEAIIA 186

Query: 529 QDKRLFLHAEQLSFAHPYTKQPMTF 553
              RL LHAE LS  HPY +  ++F
Sbjct: 187 AAPRLHLHAEHLSITHPYKQTRLSF 211