Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  154 bits (388), Expect = 4e-42
 Identities = 92/211 (43%), Positives = 123/211 (58%), Gaps = 13/211 (6%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVH--VHDSVLTRLKAQFTQAEGVFALHRLDMSTSGL 413
           + I+++D  I+VVNKP+  LSVPG     +DSV TR+      A+ V   HRLDM+TSG+
Sbjct: 14  LEILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYTRVLRDHPNAQIV---HRLDMATSGI 70

Query: 414 LVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQ 473
           +V AL R A ++L++QF  R   K Y A + G L   QG +  PL  D  +RP+QKV  Q
Sbjct: 71  IVVALRRSAERELKRQFRDRETHKIYYARVAGHLKAEQGSVDYPLICDWPNRPKQKVDHQ 130

Query: 474 QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG-----L 528
            GK + T +E +   +  T V L P TGR+HQLRVH    + +  PI+GD+ Y       
Sbjct: 131 IGKASKTLFEVISRAKRSTLVKLTPITGRSHQLRVHM---MAIGHPILGDNFYADPLAKR 187

Query: 529 QDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
              RL LHA+ LS  HPY+KQPMTF     F
Sbjct: 188 LAPRLLLHAQSLSLTHPYSKQPMTFSTPIPF 218