Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEG----VFALHRLDMSTS 411
           + I+Y+DD +++V+KP   +  P  +V    L    +   +       +  ++RLDM T+
Sbjct: 82  LNIIYEDDDLLIVDKPKNMVVHPTKNVLSKTLANAVSNHQKINNQNYKIRFVNRLDMDTT 141

Query: 412 GLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVC 471
           GLL+ A    ++++L KQ     ++K Y+A++ G L   +G I+  +  DL+D   ++  
Sbjct: 142 GLLIIAKDPYSHQRLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSI--DLNDDGIKREL 199

Query: 472 WQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD- 530
              GK + T ++ ++  +N + + +   TGRTHQ+RVH +        I+GD LYG    
Sbjct: 200 SNVGKISKTKYKVIEELKNASILEIKLLTGRTHQIRVHLS---STGNYIIGDTLYGEISN 256

Query: 531 --KRLFLHAEQLSFAHPYTKQPMTF 553
             +R  LH+  L F HP TK+ M F
Sbjct: 257 LIERQALHSYILRFIHPITKEKMEF 281