Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Pantoea sp. MT58

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 73/223 (32%), Positives = 107/223 (47%), Gaps = 26/223 (11%)

Query: 352 QGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHD-SVLTRLKAQFTQAEGV---FALHRLD 407
           Q   + IVY+D+ I+V+NKP +F+  PG    D +VL  L   +     V     +HRLD
Sbjct: 80  QDLPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNALLHHYPAIMDVPRAGIVHRLD 139

Query: 408 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPR 467
             T+GL+V A T  A   L      R + + Y A+  G ++   G ++ P+      R  
Sbjct: 140 KDTTGLMVVAKTVPAQTHLVDSLQRREITREYEAVAIGNMT-AGGTVEQPISRHSTKRTH 198

Query: 468 QKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG 527
             V    GKPA+TH+  ++  +  TR+ L   TGRTHQ+RVH +H   ++ P+VGD LYG
Sbjct: 199 MAV-HPMGKPAVTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMSH---ISHPLVGDPLYG 254

Query: 528 LQDK-----------------RLFLHAEQLSFAHPYTKQPMTF 553
            + +                 R  LHA  L   HP +   M F
Sbjct: 255 GRPRPPKGASEAFITTLRGFDRQALHATMLRLYHPISGIEMEF 297