Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA from Klebsiella michiganensis M5al

 Score =  174 bits (440), Expect = 4e-48
 Identities = 101/219 (46%), Positives = 135/219 (61%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRL 406
           NP Q   + I+YQD+ I+VVNKP+  LSVPG      DSV+TR++  F QAE V   HRL
Sbjct: 7   NPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLAEHKDSVMTRIQRDFPQAESV---HRL 63

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++V ALT+ A ++L++QF  R  +K+YVA + G   + +G + LPL  D  +RP
Sbjct: 64  DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPEKAEGLVDLPLICDWPNRP 123

Query: 467 RQKVCWQQGKPALTHWETVQ-VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++ GK A T +E ++    N  RV L P TGR+HQLRVH    L L  PI+GD  
Sbjct: 124 KQKVCYETGKAAQTEYEVLEFAADNTARVRLKPITGRSHQLRVHM---LALGHPILGDRF 180

Query: 526 YGLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y   +      RL LHAE L+  HP     MTF+   DF
Sbjct: 181 YASPEALAMAPRLLLHAETLTITHPAFGNSMTFRAPIDF 219