Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., pseudouridine synthase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  144 bits (362), Expect = 4e-39
 Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 12/212 (5%)

Query: 354 QDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTS 411
           + + +V++D  +++V KP+  LSVPG    + D +L+R++  F  A     +HRLD  TS
Sbjct: 14  EPLRLVHEDAHLLLVEKPSGLLSVPGRGPELADCLLSRVQGAFPDA---LLVHRLDRDTS 70

Query: 412 GLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVC 471
           GL+VFALT  A + L  QF  R ++K YVA + G+++E  G + LPL  D  +RP QKV 
Sbjct: 71  GLMVFALTAHAQRHLGLQFEKRQIKKSYVARVWGQVAEATGTVDLPLIVDWPNRPLQKVD 130

Query: 472 WQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY----G 527
            + GK A+T W  ++  +  TRV L+P TGR+HQLRVH      L  PI+GD  Y     
Sbjct: 131 PETGKAAVTDWRVLKRSEAETRVRLFPKTGRSHQLRVHMQ---ALGHPILGDPFYAEGAA 187

Query: 528 LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
               RL LH+E L   HP     MTF+    F
Sbjct: 188 RAFPRLMLHSESLRLRHPDGGVGMTFRSKPPF 219