Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) from Paraburkholderia bryophila 376MFSha3.1

 Score =  114 bits (286), Expect = 6e-30
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 26/223 (11%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGV-HVHDSVLTRLKAQFTQAEGVFA----LHRLDMST 410
           + IVY+DD +VV+NKPA  +  P   +   ++L  L  ++  A         +HRLD  T
Sbjct: 143 LEIVYEDDTLVVINKPAGMVVHPAAGNWSGTMLNGLLYRYGDAAAGLPRAGIVHRLDKET 202

Query: 411 SGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQK- 469
           SGL+V A T  A   L +Q  +R V++RY+AL+ G + E +G I  P+  D  +R R   
Sbjct: 203 SGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPE-EGTIDAPIGRDPRERTRMAV 261

Query: 470 VCWQQGKPALTHWETVQV----EQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           V    GKPA TH+  V       Q  T ++    TGRTHQ+RVHCAH   +  P++GD +
Sbjct: 262 VTGASGKPARTHFRRVDTAIWQRQPVTAIHCDLETGRTHQIRVHCAH---IGHPLLGDPV 318

Query: 526 YGL------------QDKRLFLHAEQLSFAHPYTKQPMTFQVD 556
           YG             +  R  LHA +L   HP T + M ++ D
Sbjct: 319 YGRARGKRSVTPLPGEFARQALHAWRLGLIHPKTGRTMQWRAD 361