Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., ribosomal large subunit pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  482 bits (1241), Expect = e-140
 Identities = 252/557 (45%), Positives = 358/557 (64%), Gaps = 20/557 (3%)

Query: 11  FTSVIAHIALPERFTFPFCYQPHPLSEIAADELQQHLLTQTDWYHPFGLTETDPQAHGKM 70
           F   ++HIALPERFT+PF Y PHPL  +AA+E++ ++ T+ +W     L        GKM
Sbjct: 5   FDQPVSHIALPERFTYPFNYTPHPLCVLAAEEVKAYISTKKEWLEELTL--------GKM 56

Query: 71  FGVLVVQHR---SGTLGYLAAFSGQLAEQNRLPGFVPPVFDRFADASFFRVDGDQIAAIN 127
           FGVL+VQ +   S ++GYLAAFSG LA +N  P FVPPV+D      FF+++ +QI+AIN
Sbjct: 57  FGVLIVQTQEEGSSSIGYLAAFSGNLAGKNLHPYFVPPVYDLLQPQGFFKIEEEQISAIN 116

Query: 128 QQVREQETDPELAELASALKQSQLQAEHELSQRRILHNKQRHFRKQQRLQAEELPEKEKH 187
            ++   E +P    L   L +   Q    L Q +      +  R+ +R  +  L ++E+ 
Sbjct: 117 VRISALEVNPHYLHLKEKLDRETEQTRLALIQAKEELKTAKKERELRRKSSPALSKEEQD 176

Query: 188 TLLARLAEESVQQKRQLQCLKQEWEQRIAALQHRLDHKLMRIEQLKQQRKQRSAALQKKL 247
            L+     ES  QK + + L++ W++RI  L+  +      IE+LK +RKQRSAALQ+KL
Sbjct: 177 ALV----RESQYQKAEFKRLERGWKERIKTLEEEVITFETEIEKLKNERKQRSAALQQKL 232

Query: 248 FSAYRFTNIRGVEKDLVELFSVTKNPLPPAGSGECAAPKLLHYAFQHQLRPIALAEFWWG 307
           F  +R  N +G  KDL  +F  T + +PPAG+GECA PKLL YA+ HQL+P+A+AEFWWG
Sbjct: 233 FEQFRMLNAKGEIKDLCTIFEQTVHKIPPAGAGECALPKLLQYAYLHQLKPLAMAEFWWG 292

Query: 308 RSPKSEIRQHKKFYPACQSKCQPILAHMLEGMPLEDNPLLSNPAQGQDITIVYQDDAIVV 367
            SPK+E+R H  +YP+C+ KC+PIL HML+G+ ++ NPL     + +++ IV++D+ +VV
Sbjct: 293 NSPKTEVRHHGYYYPSCKGKCEPILQHMLQGLEVDGNPLSPQAHRKEELEIVFEDEWLVV 352

Query: 368 VNKPAEFLSVPGVHVH-DSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFALTRRANKQL 426
           VNKP+  LSVPG     DSV  R+KA++ +A G   +HRLDM+TSGLL+ A T+  ++ L
Sbjct: 353 VNKPSGMLSVPGKEEETDSVYHRVKAKYPEATGPMIVHRLDMATSGLLLVAKTKEVHQHL 412

Query: 427 QKQFISRAVQKRYVALIE----GKLSETQGEIQLPLCGDLDDRPRQKVCWQQGKPALTHW 482
           Q+QFISR+++KRYVAL++     +  E  G I LPLC +  DRPRQ V  + GKPA+T +
Sbjct: 413 QEQFISRSIKKRYVALLDRNGLNQQLEETGTINLPLCLNPLDRPRQMVSEEYGKPAVTEY 472

Query: 483 ETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLFLHAEQLSF 542
             +       R+  YP TGRTHQLRVH AHH GLN PI+GD+LYG +  RL+LHAE + F
Sbjct: 473 RILNYSDKYIRIAFYPLTGRTHQLRVHAAHHQGLNYPILGDELYGKKADRLYLHAEYIEF 532

Query: 543 AHPYTKQPMTFQVDADF 559
            HP     +  Q +A+F
Sbjct: 533 RHPVYGDIICIQKEAEF 549