Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., ribosomal large subunit pseudouridine synthase D from Burkholderia phytofirmans PsJN

 Score =  117 bits (294), Expect = 7e-31
 Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 26/224 (11%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGV-HVHDSVLTRLKAQFTQAEGVFA----LHRLDMST 410
           + IVY+DD +VV+NKPA  +  P   +   +VL  L  ++  A         +HRLD  T
Sbjct: 143 LEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRLDKET 202

Query: 411 SGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKV 470
           SGL+V A T  A   L +Q  +R V++RY+AL+ G + E +G I  P+  D  +R R  V
Sbjct: 203 SGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPE-EGTIDAPIGRDPRERTRMAV 261

Query: 471 CWQ-QGKPALTHWETVQ----VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
                GKPA TH+  V       Q  T ++    TGRTHQ+RVHCAH   +  P++GD +
Sbjct: 262 VTSASGKPARTHFRRVDSAIWQRQPVTAIHCDLETGRTHQIRVHCAH---IGHPLLGDPV 318

Query: 526 YG----------LQD--KRLFLHAEQLSFAHPYTKQPMTFQVDA 557
           YG          L D   R  LHA +L   HP T + M ++ DA
Sbjct: 319 YGRARGKRSVTPLPDGFARQALHAWRLGLIHPQTGRTMQWRADA 362